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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
SESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRL
PEGSNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYALRG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3q9v-a1-m2-cB 99 99 1.0000 1.0000 1.0000 1.17e-67 3q9v-a1-m1-cA_3q9v-a1-m2-cB
2 3q9v-a1-m1-cA 98 98 0.9899 1.0000 1.0000 4.68e-67 3q9v-a1-m1-cA_3q9v-a1-m2-cB
3 6kyx-a1-m2-cA 100 95 0.3434 0.3400 0.3579 1.26e-15 6kyx-a1-m1-cA_6kyx-a1-m2-cA
4 6kyx-a1-m1-cA 100 95 0.3434 0.3400 0.3579 1.26e-15 6kyx-a1-m1-cA_6kyx-a1-m2-cA
5 7e1f-a1-m1-cA 95 99 0.3333 0.3474 0.3333 2.25e-13 7e1f-a1-m1-cB_7e1f-a1-m1-cA
6 1ys7-a1-m1-cB 226 98 0.3838 0.1681 0.3878 2.30e-13 1ys7-a1-m1-cA_1ys7-a1-m1-cB
7 7e1f-a1-m1-cB 93 92 0.3333 0.3548 0.3587 3.00e-13 7e1f-a1-m1-cB_7e1f-a1-m1-cA
8 2pmu-a1-m1-cD 96 95 0.3636 0.3750 0.3789 2.40e-12 2pmu-a1-m1-cC_2pmu-a1-m1-cD
9 5dcm-a1-m1-cB 98 98 0.3232 0.3265 0.3265 2.51e-12 5dcm-a1-m1-cA_5dcm-a1-m1-cB
10 1ys7-a1-m1-cA 224 98 0.3838 0.1696 0.3878 4.48e-12 1ys7-a1-m1-cA_1ys7-a1-m1-cB
11 5dcm-a1-m1-cA 97 95 0.3232 0.3299 0.3368 4.75e-12 5dcm-a1-m1-cA_5dcm-a1-m1-cB
12 4s04-a2-m1-cF 219 94 0.3434 0.1553 0.3617 8.76e-12 4s04-a2-m1-cE_4s04-a2-m1-cF
13 4s04-a2-m1-cE 219 94 0.3434 0.1553 0.3617 8.76e-12 4s04-a2-m1-cE_4s04-a2-m1-cF
14 7e1b-a2-m1-cH 208 99 0.3333 0.1587 0.3333 2.14e-11 7e1b-a2-m1-cF_7e1b-a2-m1-cH, 7e1b-a2-m1-cH_7e1b-a2-m1-cE
15 7e1b-a2-m1-cF 208 99 0.3333 0.1587 0.3333 2.14e-11 7e1b-a2-m1-cF_7e1b-a2-m1-cH
16 7e1b-a1-m1-cD 208 99 0.3333 0.1587 0.3333 2.28e-11 7e1b-a1-m1-cD_7e1b-a1-m1-cC
17 7e1b-a1-m1-cC 209 99 0.3333 0.1579 0.3333 2.66e-11 7e1b-a1-m1-cD_7e1b-a1-m1-cC
18 7e1b-a2-m1-cE 209 99 0.3333 0.1579 0.3333 2.75e-11 7e1b-a2-m1-cH_7e1b-a2-m1-cE
19 2oqr-a1-m2-cA 226 95 0.3333 0.1460 0.3474 4.18e-11 2oqr-a1-m1-cA_2oqr-a1-m2-cA
20 2oqr-a1-m1-cA 226 95 0.3333 0.1460 0.3474 4.18e-11 2oqr-a1-m1-cA_2oqr-a1-m2-cA
21 4b09-a1-m1-cA 216 88 0.3030 0.1389 0.3409 6.16e-11 4b09-a1-m1-cB_4b09-a1-m1-cA
22 5ed4-a2-m1-cF 214 95 0.3434 0.1589 0.3579 6.16e-11 5ed4-a2-m1-cF_5ed4-a2-m1-cE
23 4b09-a1-m1-cB 214 88 0.3030 0.1402 0.3409 6.22e-11 4b09-a1-m1-cB_4b09-a1-m1-cA
24 3r0j-a1-m1-cA 221 95 0.3434 0.1538 0.3579 6.53e-11 3r0j-a1-m1-cB_3r0j-a1-m1-cA
25 2pmu-a1-m1-cC 92 95 0.3434 0.3696 0.3579 7.04e-11 2pmu-a1-m1-cC_2pmu-a1-m1-cD
26 3r0j-a1-m1-cB 218 95 0.3434 0.1560 0.3579 7.18e-11 3r0j-a1-m1-cB_3r0j-a1-m1-cA
27 5ed4-a2-m1-cE 224 95 0.3434 0.1518 0.3579 7.45e-11 5ed4-a2-m1-cF_5ed4-a2-m1-cE
28 5u8m-a1-m1-cB 229 93 0.3333 0.1441 0.3548 8.82e-10 5u8m-a1-m1-cA_5u8m-a1-m1-cB
29 5u8m-a1-m1-cA 229 93 0.3333 0.1441 0.3548 8.82e-10 5u8m-a1-m1-cA_5u8m-a1-m1-cB
30 4kfc-a1-m1-cB 224 93 0.2828 0.1250 0.3011 8.97e-09 4kfc-a1-m1-cA_4kfc-a1-m1-cB
31 4kfc-a1-m1-cA 223 93 0.2828 0.1256 0.3011 9.09e-09 4kfc-a1-m1-cA_4kfc-a1-m1-cB
32 5x5l-a1-m1-cE 98 73 0.2626 0.2653 0.3562 1.25e-08 5x5l-a1-m1-cA_5x5l-a1-m1-cE
33 5x5l-a1-m1-cA 95 73 0.2626 0.2737 0.3562 1.62e-08 5x5l-a1-m1-cA_5x5l-a1-m1-cE
34 5za3-a1-m1-cB 100 97 0.3030 0.3000 0.3093 1.03e-07 5za3-a1-m1-cB_5za3-a1-m1-cA
35 5za3-a1-m1-cA 101 100 0.3030 0.2970 0.3000 1.13e-07 5za3-a1-m1-cB_5za3-a1-m1-cA
36 4nhj-a1-m1-cB 101 97 0.3434 0.3366 0.3505 1.25e-07 4nhj-a1-m1-cB_4nhj-a1-m1-cA
37 4nhj-a1-m1-cA 102 97 0.3434 0.3333 0.3505 1.51e-07 4nhj-a1-m1-cB_4nhj-a1-m1-cA
38 3mcq-a1-m2-cA 295 71 0.2222 0.0746 0.3099 0.17 3mcq-a1-m1-cA_3mcq-a1-m2-cA
39 3mcq-a1-m1-cA 295 71 0.2222 0.0746 0.3099 0.17 3mcq-a1-m1-cA_3mcq-a1-m2-cA
40 1o8c-a1-m1-cD 324 41 0.1616 0.0494 0.3902 4.5 1o8c-a1-m1-cA_1o8c-a1-m1-cD
41 1o8c-a1-m1-cA 324 41 0.1616 0.0494 0.3902 4.5 1o8c-a1-m1-cA_1o8c-a1-m1-cD
42 6q16-a1-m1-cAZ 57 37 0.1111 0.1930 0.2973 6.0 6q16-a1-m1-cBE_6q16-a1-m1-cAZ
43 3l3s-a3-m1-cI 226 57 0.1515 0.0664 0.2632 6.1 3l3s-a3-m1-cG_3l3s-a3-m1-cI
44 3l3s-a3-m1-cG 225 57 0.1515 0.0667 0.2632 6.8 3l3s-a3-m1-cG_3l3s-a3-m1-cI

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Reference:
Jacob Schwartz et al.

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