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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
SFNNELADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAFYKSEIHIPDVEPAAFLILLKY
YSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2vkp-a1-m2-cA 99 99 1.0000 1.0000 1.0000 8.16e-68 2vkp-a1-m2-cA_2vkp-a1-m2-cB
2 2vkp-a1-m1-cA 99 99 1.0000 1.0000 1.0000 8.16e-68 2vkp-a1-m1-cA_2vkp-a1-m2-cB
3 2vkp-a1-m2-cB 105 105 1.0000 0.9429 0.9429 3.36e-65 2vkp-a1-m1-cA_2vkp-a1-m2-cB, 2vkp-a1-m1-cB_2vkp-a1-m2-cB, 2vkp-a1-m2-cA_2vkp-a1-m2-cB
4 2vkp-a1-m1-cB 105 105 1.0000 0.9429 0.9429 3.36e-65 2vkp-a1-m1-cB_2vkp-a1-m2-cB
5 3i3n-a1-m1-cA 256 85 0.2121 0.0820 0.2471 0.057 3i3n-a1-m1-cA_3i3n-a1-m1-cB
6 2yy9-a1-m1-cA 106 72 0.2222 0.2075 0.3056 0.11 2yy9-a1-m1-cA_2yy9-a1-m1-cB
7 1buo-a1-m2-cA 121 78 0.2424 0.1983 0.3077 0.12 1buo-a1-m1-cA_1buo-a1-m2-cA
8 1buo-a1-m1-cA 121 78 0.2424 0.1983 0.3077 0.12 1buo-a1-m1-cA_1buo-a1-m2-cA
9 2nn2-a2-m2-cB 117 80 0.2222 0.1880 0.2750 0.17 2nn2-a2-m1-cA_2nn2-a2-m2-cB, 2nn2-a2-m1-cB_2nn2-a2-m2-cB, 2nn2-a2-m2-cA_2nn2-a2-m2-cB
10 2nn2-a2-m2-cA 117 80 0.2222 0.1880 0.2750 0.17 2nn2-a2-m1-cA_2nn2-a2-m2-cA, 2nn2-a2-m2-cA_2nn2-a2-m2-cB
11 2nn2-a2-m1-cB 117 80 0.2222 0.1880 0.2750 0.17 2nn2-a2-m1-cB_2nn2-a2-m2-cB
12 2nn2-a2-m1-cA 117 80 0.2222 0.1880 0.2750 0.17 2nn2-a2-m1-cA_2nn2-a2-m2-cA, 2nn2-a2-m1-cA_2nn2-a2-m2-cB
13 2yy9-a1-m1-cB 109 77 0.2424 0.2202 0.3117 0.19 2yy9-a1-m1-cA_2yy9-a1-m1-cB
14 6guw-a1-m2-cA 118 99 0.2424 0.2034 0.2424 0.36 6guw-a1-m1-cA_6guw-a1-m2-cA
15 6guw-a1-m1-cA 118 99 0.2424 0.2034 0.2424 0.36 6guw-a1-m1-cA_6guw-a1-m2-cA
16 3i3n-a1-m1-cB 261 96 0.2323 0.0881 0.2396 1.5 3i3n-a1-m1-cA_3i3n-a1-m1-cB
17 7ms2-a1-m1-cB 744 49 0.1717 0.0228 0.3469 9.8 7ms2-a1-m1-cB_7ms2-a1-m1-cA
18 7ms2-a1-m1-cA 749 49 0.1717 0.0227 0.3469 9.8 7ms2-a1-m1-cB_7ms2-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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