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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=86)
SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSIT
DFGIFIGLDGGIDGLVHLSDISWAQA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2bh8-a1-m2-cB 86 86 1.0000 1.0000 1.0000 9.05e-57 2bh8-a1-m1-cA_2bh8-a1-m2-cB, 2bh8-a1-m1-cB_2bh8-a1-m2-cB, 2bh8-a1-m2-cA_2bh8-a1-m2-cB
2 2bh8-a1-m1-cB 86 86 1.0000 1.0000 1.0000 9.05e-57 2bh8-a1-m1-cB_2bh8-a1-m2-cB
3 2bh8-a1-m2-cA 85 84 0.9767 0.9882 1.0000 1.24e-55 2bh8-a1-m2-cA_2bh8-a1-m2-cB
4 2bh8-a1-m1-cA 85 84 0.9767 0.9882 1.0000 1.24e-55 2bh8-a1-m1-cA_2bh8-a1-m2-cB
5 3i2z-a1-m1-cB 67 54 0.3721 0.4776 0.5926 1.04e-13 3i2z-a1-m1-cB_3i2z-a1-m1-cA
6 3i2z-a1-m1-cA 71 54 0.3721 0.4507 0.5926 1.05e-13 3i2z-a1-m1-cB_3i2z-a1-m1-cA
7 3cam-a1-m1-cB 65 48 0.3256 0.4308 0.5833 7.66e-12 3cam-a1-m1-cA_3cam-a1-m1-cB
8 3cam-a1-m1-cA 65 48 0.3256 0.4308 0.5833 7.66e-12 3cam-a1-m1-cA_3cam-a1-m1-cB
9 2i5m-a2-m2-cX 66 32 0.2442 0.3182 0.6562 1.77e-07 2i5m-a2-m1-cX_2i5m-a2-m2-cX
10 2i5m-a2-m1-cX 66 32 0.2442 0.3182 0.6562 1.77e-07 2i5m-a2-m1-cX_2i5m-a2-m2-cX
11 7f3i-a1-m1-cA 93 46 0.2442 0.2258 0.4565 5.16e-07 7f3i-a1-m1-cE_7f3i-a1-m1-cA
12 7f3i-a1-m1-cE 91 46 0.2442 0.2308 0.4565 5.23e-07 7f3i-a1-m1-cE_7f3i-a1-m1-cA
13 1hzb-a1-m1-cB 66 30 0.2326 0.3030 0.6667 1.29e-06 1hzb-a1-m1-cA_1hzb-a1-m1-cB
14 1hzb-a1-m1-cA 66 30 0.2326 0.3030 0.6667 1.29e-06 1hzb-a1-m1-cA_1hzb-a1-m1-cB
15 2hax-a1-m1-cB 66 30 0.2326 0.3030 0.6667 1.33e-06 2hax-a1-m1-cA_2hax-a1-m1-cB
16 2hax-a1-m1-cA 66 30 0.2326 0.3030 0.6667 1.33e-06 2hax-a1-m1-cA_2hax-a1-m1-cB
17 1c9o-a1-m1-cB 66 30 0.2326 0.3030 0.6667 1.33e-06 1c9o-a1-m1-cA_1c9o-a1-m1-cB
18 1c9o-a1-m1-cA 66 30 0.2326 0.3030 0.6667 1.33e-06 1c9o-a1-m1-cA_1c9o-a1-m1-cB
19 5jx4-a1-m1-cB 66 30 0.2326 0.3030 0.6667 1.45e-06 5jx4-a1-m1-cA_5jx4-a1-m1-cB
20 5jx4-a1-m1-cA 65 30 0.2326 0.3077 0.6667 1.50e-06 5jx4-a1-m1-cA_5jx4-a1-m1-cB
21 3aqq-a1-m1-cC 97 56 0.2907 0.2577 0.4464 1.55e-06 3aqq-a1-m1-cC_3aqq-a1-m1-cB, 3aqq-a1-m1-cC_3aqq-a1-m1-cD
22 3aqq-a1-m1-cD 98 54 0.2907 0.2551 0.4630 1.91e-06 3aqq-a1-m1-cC_3aqq-a1-m1-cD, 3aqq-a1-m1-cD_3aqq-a1-m1-cB
23 3aqq-a1-m1-cB 99 54 0.2907 0.2525 0.4630 2.01e-06 3aqq-a1-m1-cC_3aqq-a1-m1-cB, 3aqq-a1-m1-cD_3aqq-a1-m1-cB
24 3ulj-a3-m2-cA 87 35 0.1860 0.1839 0.4571 0.013 3ulj-a3-m2-cA_3ulj-a3-m2-cB
25 3ulj-a3-m1-cA 87 35 0.1860 0.1839 0.4571 0.013 3ulj-a3-m1-cA_3ulj-a3-m2-cB
26 4alp-a1-m4-cD 84 35 0.1860 0.1905 0.4571 0.013 4alp-a1-m4-cD_4alp-a1-m2-cB
27 4alp-a1-m2-cB 86 35 0.1860 0.1860 0.4571 0.013 4alp-a1-m4-cD_4alp-a1-m2-cB
28 3ulj-a3-m2-cB 89 37 0.1977 0.1910 0.4595 0.016 3ulj-a3-m1-cA_3ulj-a3-m2-cB, 3ulj-a3-m2-cA_3ulj-a3-m2-cB
29 3lwt-a2-m2-cX 457 63 0.2674 0.0503 0.3651 2.2 3lwt-a2-m1-cX_3lwt-a2-m2-cX
30 3lwt-a2-m1-cX 457 63 0.2674 0.0503 0.3651 2.2 3lwt-a2-m1-cX_3lwt-a2-m2-cX
31 5ajt-a2-m1-cD 217 38 0.1744 0.0691 0.3947 4.4 5ajt-a2-m1-cC_5ajt-a2-m1-cD
32 5ajt-a2-m1-cC 217 38 0.1744 0.0691 0.3947 4.4 5ajt-a2-m1-cC_5ajt-a2-m1-cD
33 3ihb-a2-m3-cB 448 55 0.2209 0.0424 0.3455 4.6 3ihb-a2-m1-cB_3ihb-a2-m3-cB
34 3ihb-a2-m1-cB 448 55 0.2209 0.0424 0.3455 4.6 3ihb-a2-m1-cB_3ihb-a2-m3-cB

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Reference:
Jacob Schwartz et al.

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