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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=63)
SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLL
NGT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1rpe-a1-m1-cR 63 63 1.0000 1.0000 1.0000 4.48e-40 1rpe-a1-m1-cL_1rpe-a1-m1-cR
2 1rpe-a1-m1-cL 63 63 1.0000 1.0000 1.0000 4.48e-40 1rpe-a1-m1-cL_1rpe-a1-m1-cR
3 3cro-a1-m1-cL 66 63 0.5238 0.5000 0.5238 3.38e-16 3cro-a1-m1-cR_3cro-a1-m1-cL
4 2cro-a1-m3-cA 65 63 0.5238 0.5077 0.5238 3.60e-16 2cro-a1-m2-cA_2cro-a1-m3-cA
5 2cro-a1-m2-cA 65 63 0.5238 0.5077 0.5238 3.60e-16 2cro-a1-m2-cA_2cro-a1-m3-cA
6 3cro-a1-m1-cR 64 62 0.5079 0.5000 0.5161 1.74e-15 3cro-a1-m1-cR_3cro-a1-m1-cL
7 3zkc-a1-m1-cB 63 62 0.3175 0.3175 0.3226 6.62e-04 3zkc-a1-m1-cA_3zkc-a1-m1-cB
8 3zkc-a1-m1-cA 61 61 0.3175 0.3279 0.3279 0.002 3zkc-a1-m1-cA_3zkc-a1-m1-cB
9 1b0n-a6-m3-cA 103 62 0.3175 0.1942 0.3226 0.003 1b0n-a6-m1-cA_1b0n-a6-m3-cA
10 1b0n-a6-m1-cA 103 62 0.3175 0.1942 0.3226 0.003 1b0n-a6-m1-cA_1b0n-a6-m3-cA
11 1b0n-a5-m2-cA 103 62 0.3175 0.1942 0.3226 0.003 1b0n-a5-m1-cA_1b0n-a5-m2-cA
12 1b0n-a5-m1-cA 103 62 0.3175 0.1942 0.3226 0.003 1b0n-a5-m1-cA_1b0n-a5-m2-cA
13 2fmy-a2-m1-cD 218 31 0.2063 0.0596 0.4194 0.22 2fmy-a2-m1-cC_2fmy-a2-m1-cD
14 2fmy-a2-m1-cC 218 31 0.2063 0.0596 0.4194 0.22 2fmy-a2-m1-cC_2fmy-a2-m1-cD
15 3kxa-a2-m1-cD 127 43 0.2698 0.1339 0.3953 0.24 3kxa-a2-m1-cD_3kxa-a2-m1-cC
16 3kxa-a2-m1-cC 128 43 0.2698 0.1328 0.3953 0.26 3kxa-a2-m1-cD_3kxa-a2-m1-cC
17 2hkx-a1-m1-cA 218 27 0.1905 0.0550 0.4444 0.35 2hkx-a1-m1-cB_2hkx-a1-m1-cA
18 4or2-a1-m1-cB 366 48 0.2063 0.0355 0.2708 1.1 4or2-a1-m1-cA_4or2-a1-m1-cB
19 4ghj-a1-m1-cA 71 39 0.1905 0.1690 0.3077 1.5 4ghj-a1-m1-cA_4ghj-a1-m1-cB
20 4ghj-a1-m1-cB 74 39 0.1905 0.1622 0.3077 2.0 4ghj-a1-m1-cA_4ghj-a1-m1-cB
21 5i5l-a1-m2-cA 480 63 0.2857 0.0375 0.2857 2.8 5i5l-a1-m1-cA_5i5l-a1-m2-cA
22 5i5l-a1-m1-cA 480 63 0.2857 0.0375 0.2857 2.8 5i5l-a1-m1-cA_5i5l-a1-m2-cA
23 3bdn-a1-m1-cB 234 29 0.1905 0.0513 0.4138 3.3 3bdn-a1-m1-cA_3bdn-a1-m1-cB
24 3bdn-a1-m1-cA 234 29 0.1905 0.0513 0.4138 3.3 3bdn-a1-m1-cA_3bdn-a1-m1-cB
25 4bmv-a5-m1-cJ 255 44 0.2540 0.0627 0.3636 3.5 4bmv-a5-m1-cJ_4bmv-a5-m1-cG
26 4bmv-a5-m1-cG 256 44 0.2540 0.0625 0.3636 3.5 4bmv-a5-m1-cJ_4bmv-a5-m1-cG
27 4mcx-a1-m1-cC 92 50 0.2222 0.1522 0.2800 3.7 4mcx-a1-m1-cC_4mcx-a1-m1-cA
28 7jvt-a1-m2-cD 199 29 0.1905 0.0603 0.4138 4.2 7jvt-a1-m1-cD_7jvt-a1-m2-cD
29 7jvt-a1-m1-cD 199 29 0.1905 0.0603 0.4138 4.2 7jvt-a1-m1-cD_7jvt-a1-m2-cD
30 7t8i-a1-m1-cA 63 53 0.2540 0.2540 0.3019 4.4 7t8i-a1-m1-cA_7t8i-a1-m1-cB
31 4mcx-a1-m1-cA 93 50 0.2222 0.1505 0.2800 4.5 4mcx-a1-m1-cC_4mcx-a1-m1-cA
32 1lmb-a1-m1-c3 87 29 0.1905 0.1379 0.4138 4.9 1lmb-a1-m1-c3_1lmb-a1-m1-c4
33 2hoe-a1-m2-cA 346 63 0.2857 0.0520 0.2857 5.3 2hoe-a1-m1-cA_2hoe-a1-m2-cA
34 2hoe-a1-m1-cA 346 63 0.2857 0.0520 0.2857 5.3 2hoe-a1-m1-cA_2hoe-a1-m2-cA
35 1lmb-a1-m1-c4 92 29 0.1905 0.1304 0.4138 5.4 1lmb-a1-m1-c3_1lmb-a1-m1-c4
36 1lrp-a2-m1-cC 89 29 0.1905 0.1348 0.4138 5.4 1lrp-a2-m1-cB_1lrp-a2-m1-cC
37 1lrp-a2-m1-cB 89 29 0.1905 0.1348 0.4138 5.4 1lrp-a2-m1-cB_1lrp-a2-m1-cC
38 1y66-a1-m1-cD 46 16 0.1587 0.2174 0.6250 6.6 1y66-a1-m1-cB_1y66-a1-m1-cD, 1y66-a1-m1-cD_1y66-a1-m1-cA
39 1y66-a1-m1-cB 46 16 0.1587 0.2174 0.6250 6.6 1y66-a1-m1-cB_1y66-a1-m1-cA, 1y66-a1-m1-cB_1y66-a1-m1-cD
40 5hsq-a1-m2-cA 488 63 0.2857 0.0369 0.2857 7.2 5hsq-a1-m1-cA_5hsq-a1-m2-cA
41 5hsq-a1-m1-cA 488 63 0.2857 0.0369 0.2857 7.2 5hsq-a1-m1-cA_5hsq-a1-m2-cA
42 1y66-a1-m1-cA 50 16 0.1587 0.2000 0.6250 7.6 1y66-a1-m1-cB_1y66-a1-m1-cA, 1y66-a1-m1-cD_1y66-a1-m1-cA
43 3kz3-a1-m1-cB 80 29 0.1746 0.1375 0.3793 8.3 3kz3-a1-m1-cA_3kz3-a1-m1-cB
44 3kz3-a1-m1-cA 80 29 0.1746 0.1375 0.3793 8.3 3kz3-a1-m1-cA_3kz3-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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