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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=38)
SKDAEKLNDEIISLNIENSLLQDKLTALQAEYDKLIQR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6rgo-a1-m1-cC 38 38 1.0000 1.0000 1.0000 4.85e-20 6rgo-a1-m1-cD_6rgo-a1-m1-cC
2 6rgo-a1-m1-cD 35 35 0.9211 1.0000 1.0000 1.40e-17 6rgo-a1-m1-cD_6rgo-a1-m1-cC
3 3a7o-a3-m1-cF 58 26 0.3947 0.2586 0.5769 0.002 3a7o-a3-m1-cF_3a7o-a3-m1-cE
4 3a7o-a3-m1-cE 60 26 0.3947 0.2500 0.5769 0.002 3a7o-a3-m1-cF_3a7o-a3-m1-cE
5 2p90-a1-m1-cC 266 37 0.3158 0.0451 0.3243 0.44 2p90-a1-m1-cC_2p90-a1-m1-cA
6 2p90-a1-m1-cA 269 37 0.3158 0.0446 0.3243 0.54 2p90-a1-m1-cC_2p90-a1-m1-cA
7 2i2r-a3-m1-cC 126 34 0.3158 0.0952 0.3529 7.5 2i2r-a3-m1-cB_2i2r-a3-m1-cC
8 4dxk-a1-m8-cA 364 25 0.2368 0.0247 0.3600 9.6 4dxk-a1-m2-cA_4dxk-a1-m8-cA, 4dxk-a1-m3-cA_4dxk-a1-m8-cA, 4dxk-a1-m6-cA_4dxk-a1-m8-cA
9 4dxk-a1-m6-cA 364 25 0.2368 0.0247 0.3600 9.6 4dxk-a1-m6-cA_4dxk-a1-m8-cA
10 4dxk-a1-m3-cA 364 25 0.2368 0.0247 0.3600 9.6 4dxk-a1-m3-cA_4dxk-a1-m8-cA
11 4dxk-a1-m2-cA 364 25 0.2368 0.0247 0.3600 9.6 4dxk-a1-m2-cA_4dxk-a1-m8-cA

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Reference:
Jacob Schwartz et al.

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