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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=54)
SKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5zkt-a1-m1-cA 54 54 1.0000 1.0000 1.0000 2.19e-33 5zkt-a1-m1-cA_5zkt-a1-m1-cB
2 5zkt-a1-m1-cB 55 54 1.0000 0.9818 1.0000 2.65e-33 5zkt-a1-m1-cA_5zkt-a1-m1-cB
3 7vp2-a1-m1-cB 58 54 0.7778 0.7241 0.7778 3.33e-26 7vp2-a1-m1-cB_7vp2-a1-m1-cA
4 7vp2-a1-m1-cA 83 54 0.7778 0.5060 0.7778 5.84e-26 7vp2-a1-m1-cB_7vp2-a1-m1-cA
5 7vp3-a4-m1-cP 61 42 0.2593 0.2295 0.3333 2.45e-04 7vp3-a4-m1-cP_7vp3-a4-m1-cN
6 7vp3-a4-m1-cN 62 42 0.2593 0.2258 0.3333 2.53e-04 7vp3-a4-m1-cP_7vp3-a4-m1-cN
7 4ksf-a1-m4-cA 400 48 0.3333 0.0450 0.3750 1.0 4ksf-a1-m2-cA_4ksf-a1-m4-cA, 4ksf-a1-m3-cA_4ksf-a1-m4-cA
8 4ksf-a1-m3-cA 400 48 0.3333 0.0450 0.3750 1.0 4ksf-a1-m3-cA_4ksf-a1-m4-cA
9 4ksf-a1-m2-cA 400 48 0.3333 0.0450 0.3750 1.0 4ksf-a1-m2-cA_4ksf-a1-m4-cA
10 6xj9-a1-m1-cB 681 42 0.3148 0.0250 0.4048 3.5 6xj9-a1-m1-cB_6xj9-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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