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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCDKDETGAYLIDRDPTYFGPVLNYLRHGK
LVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRER

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3drz-a1-m1-cD 95 95 1.0000 1.0000 1.0000 6.32e-67 3drz-a1-m1-cD_3drz-a1-m1-cE
2 3drz-a1-m1-cE 97 97 1.0000 0.9794 0.9794 5.62e-65 3drz-a1-m1-cD_3drz-a1-m1-cE
3 5bxh-a1-m1-cC 99 96 0.5053 0.4848 0.5000 1.94e-27 5bxh-a1-m1-cE_5bxh-a1-m1-cC
4 5bxh-a1-m1-cE 97 94 0.5053 0.4948 0.5106 2.63e-27 5bxh-a1-m1-cE_5bxh-a1-m1-cC
5 4zgc-a1-m1-cA 372 84 0.3789 0.0968 0.4286 2.38e-12 4zgc-a1-m1-cA_4zgc-a1-m1-cB
6 5fta-a1-m1-cB 101 92 0.3684 0.3465 0.3804 7.49e-12 5fta-a1-m1-cD_5fta-a1-m1-cB
7 5fta-a1-m1-cA 101 92 0.3684 0.3465 0.3804 7.49e-12 5fta-a1-m1-cD_5fta-a1-m1-cA
8 4zgc-a1-m1-cB 373 89 0.3789 0.0965 0.4045 9.32e-12 4zgc-a1-m1-cA_4zgc-a1-m1-cB
9 5fta-a1-m1-cC 97 91 0.3579 0.3505 0.3736 3.70e-11 5fta-a1-m1-cC_5fta-a1-m1-cD
10 5fta-a1-m1-cD 99 91 0.3579 0.3434 0.3736 3.74e-11 5fta-a1-m1-cC_5fta-a1-m1-cD, 5fta-a1-m1-cD_5fta-a1-m1-cA, 5fta-a1-m1-cD_5fta-a1-m1-cB
11 3kvt-a1-m4-cA 103 85 0.3053 0.2816 0.3412 1.83e-06 3kvt-a1-m2-cA_3kvt-a1-m4-cA
12 3kvt-a1-m2-cA 103 85 0.3053 0.2816 0.3412 1.83e-06 3kvt-a1-m2-cA_3kvt-a1-m4-cA
13 1nn7-a2-m5-cA 105 87 0.3263 0.2952 0.3563 1.83e-06 1nn7-a2-m1-cA_1nn7-a2-m5-cA
14 1nn7-a2-m1-cA 105 87 0.3263 0.2952 0.3563 1.83e-06 1nn7-a2-m1-cA_1nn7-a2-m5-cA
15 7f0j-a1-m1-cH 386 102 0.3684 0.0907 0.3431 2.07e-06 7f0j-a1-m1-cF_7f0j-a1-m1-cH
16 7f0j-a1-m1-cF 386 102 0.3684 0.0907 0.3431 2.07e-06 7f0j-a1-m1-cF_7f0j-a1-m1-cH
17 7ukh-a1-m1-cD 203 85 0.3263 0.1527 0.3647 3.12e-06 7ukh-a1-m1-cC_7ukh-a1-m1-cD
18 7ukh-a1-m1-cC 203 85 0.3263 0.1527 0.3647 3.12e-06 7ukh-a1-m1-cC_7ukh-a1-m1-cD
19 2i2r-a3-m1-cC 126 86 0.3263 0.2460 0.3605 6.77e-06 2i2r-a3-m1-cB_2i2r-a3-m1-cC
20 2i2r-a3-m1-cB 124 86 0.3263 0.2500 0.3605 6.92e-06 2i2r-a3-m1-cB_2i2r-a3-m1-cC
21 7pqu-a1-m1-cD 328 90 0.3158 0.0915 0.3333 1.25e-05 7pqu-a1-m1-cC_7pqu-a1-m1-cD
22 7pqu-a1-m1-cC 328 90 0.3158 0.0915 0.3333 1.25e-05 7pqu-a1-m1-cC_7pqu-a1-m1-cD
23 7re5-a1-m1-cA 108 98 0.2842 0.2500 0.2755 3.35e-05 7re5-a1-m1-cE_7re5-a1-m1-cA
24 7re5-a1-m1-cE 107 98 0.2842 0.2523 0.2755 3.59e-05 7re5-a1-m1-cE_7re5-a1-m1-cA
25 3cnf-a1-m9-cA 920 48 0.1579 0.0163 0.3125 1.9 3cnf-a1-m8-cA_3cnf-a1-m9-cA, 3cnf-a1-m9-cA_3cnf-a1-m9-cB
26 3cnf-a1-m8-cA 920 48 0.1579 0.0163 0.3125 1.9 3cnf-a1-m8-cA_3cnf-a1-m9-cA
27 3cnf-a1-m24-cA 920 48 0.1579 0.0163 0.3125 1.9 3cnf-a1-m24-cA_3cnf-a1-m9-cB
28 3cnf-a1-m10-cA 920 48 0.1579 0.0163 0.3125 1.9 3cnf-a1-m10-cA_3cnf-a1-m9-cB
29 3cnf-a1-m9-cB 924 48 0.1579 0.0162 0.3125 2.0 3cnf-a1-m10-cA_3cnf-a1-m9-cB, 3cnf-a1-m24-cA_3cnf-a1-m9-cB, 3cnf-a1-m54-cB_3cnf-a1-m9-cB, 3cnf-a1-m9-cA_3cnf-a1-m9-cB
30 3cnf-a1-m54-cB 924 48 0.1579 0.0162 0.3125 2.0 3cnf-a1-m54-cB_3cnf-a1-m9-cB
31 5iry-a1-m1-cB 539 68 0.2000 0.0353 0.2794 3.0 5iry-a1-m1-cA_5iry-a1-m1-cB
32 5iry-a1-m1-cA 539 68 0.2000 0.0353 0.2794 3.0 5iry-a1-m1-cA_5iry-a1-m1-cB
33 7ydx-a1-m2-cB 261 22 0.1158 0.0421 0.5000 8.4 7ydx-a1-m2-cB_7ydx-a1-m1-cA
34 7ydx-a1-m1-cA 271 22 0.1158 0.0406 0.5000 9.4 7ydx-a1-m2-cB_7ydx-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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