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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGSQGGVARIKPAVIKYLI
SHSFRFSEIKPGCLKVMLK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3fau-a1-m1-cD 79 79 1.0000 1.0000 1.0000 8.78e-54 3fau-a1-m1-cC_3fau-a1-m1-cD, 3fau-a1-m1-cD_3fau-a1-m1-cB
2 3fau-a3-m1-cB 81 81 1.0000 0.9753 0.9753 9.18e-52 3fau-a3-m1-cC_3fau-a3-m1-cB
3 3fau-a1-m1-cB 81 81 1.0000 0.9753 0.9753 9.18e-52 3fau-a1-m1-cD_3fau-a1-m1-cB
4 3fau-a3-m1-cC 77 78 0.9620 0.9870 0.9744 1.83e-49 3fau-a3-m1-cC_3fau-a3-m1-cB
5 3fau-a1-m1-cC 77 78 0.9620 0.9870 0.9744 1.83e-49 3fau-a1-m1-cC_3fau-a1-m1-cD
6 4hyz-a1-m2-cB 111 69 0.2658 0.1892 0.3043 0.86 4hyz-a1-m1-cA_4hyz-a1-m2-cB, 4hyz-a1-m1-cB_4hyz-a1-m2-cB
7 4hyz-a1-m1-cB 111 69 0.2658 0.1892 0.3043 0.86 4hyz-a1-m1-cB_4hyz-a1-m2-cB
8 4hyz-a1-m1-cA 111 69 0.2658 0.1892 0.3043 0.86 4hyz-a1-m1-cA_4hyz-a1-m2-cB
9 3ub3-a1-m2-cA 125 25 0.1266 0.0800 0.4000 0.89 3ub3-a1-m1-cA_3ub3-a1-m2-cA
10 3ub3-a1-m1-cA 125 25 0.1266 0.0800 0.4000 0.89 3ub3-a1-m1-cA_3ub3-a1-m2-cA
11 7zkk-a1-m4-cA 669 28 0.1392 0.0164 0.3929 2.5 7zkk-a1-m1-cA_7zkk-a1-m4-cA
12 7zkk-a1-m1-cA 669 28 0.1392 0.0164 0.3929 2.5 7zkk-a1-m1-cA_7zkk-a1-m4-cA
13 2yy8-a1-m1-cA 174 26 0.1646 0.0747 0.5000 6.2 2yy8-a1-m1-cA_2yy8-a1-m1-cB
14 1nx8-a1-m2-cA 248 24 0.1392 0.0444 0.4583 6.2 1nx8-a1-m2-cA_1nx8-a1-m1-cB
15 2yy8-a1-m1-cB 174 26 0.1646 0.0747 0.5000 6.3 2yy8-a1-m1-cA_2yy8-a1-m1-cB
16 1nx8-a1-m1-cB 256 24 0.1392 0.0430 0.4583 6.3 1nx8-a1-m2-cA_1nx8-a1-m1-cB
17 6qx4-a1-m1-cA 585 36 0.1646 0.0222 0.3611 7.1 6qx4-a1-m1-cA_6qx4-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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