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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
SLFPSYKLKIIQGNELEPRAVAALRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRN
GIIKERSNLTVYFENGVLVRTEGDALQNAAEALRAKQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5wam-a1-m2-cA 103 97 1.0000 0.9417 1.0000 5.72e-69 5wam-a1-m1-cA_5wam-a1-m2-cA, 5wam-a1-m2-cB_5wam-a1-m2-cA
2 5wam-a1-m1-cA 103 97 1.0000 0.9417 1.0000 5.72e-69 5wam-a1-m1-cA_5wam-a1-m2-cA, 5wam-a1-m2-cB_5wam-a1-m1-cA
3 5wam-a1-m2-cB 97 97 1.0000 1.0000 1.0000 8.11e-69 5wam-a1-m2-cB_5wam-a1-m1-cA, 5wam-a1-m2-cB_5wam-a1-m2-cA
4 7jrk-a1-m1-cB 88 68 0.2371 0.2614 0.3382 4.28e-13 7jrk-a1-m1-cA_7jrk-a1-m1-cB
5 7jrk-a1-m1-cA 88 68 0.2371 0.2614 0.3382 4.28e-13 7jrk-a1-m1-cA_7jrk-a1-m1-cB
6 4nzp-a1-m4-cA 385 91 0.2784 0.0701 0.2967 1.1 4nzp-a1-m1-cA_4nzp-a1-m4-cA, 4nzp-a1-m2-cA_4nzp-a1-m4-cA, 4nzp-a1-m3-cA_4nzp-a1-m4-cA
7 4nzp-a1-m3-cA 385 91 0.2784 0.0701 0.2967 1.1 4nzp-a1-m3-cA_4nzp-a1-m4-cA
8 4nzp-a1-m2-cA 385 91 0.2784 0.0701 0.2967 1.1 4nzp-a1-m2-cA_4nzp-a1-m4-cA
9 4nzp-a1-m1-cA 385 91 0.2784 0.0701 0.2967 1.1 4nzp-a1-m1-cA_4nzp-a1-m4-cA
10 3fg1-a5-m1-cD 681 35 0.1340 0.0191 0.3714 2.7 3fg1-a5-m1-cD_3fg1-a5-m1-cA
11 3fg1-a5-m1-cB 682 35 0.1340 0.0191 0.3714 2.8 3fg1-a5-m1-cB_3fg1-a5-m1-cA
12 3fg1-a5-m1-cA 684 35 0.1340 0.0190 0.3714 2.8 3fg1-a5-m1-cB_3fg1-a5-m1-cA, 3fg1-a5-m1-cC_3fg1-a5-m1-cA, 3fg1-a5-m1-cD_3fg1-a5-m1-cA
13 3fg1-a5-m1-cC 683 35 0.1340 0.0190 0.3714 2.8 3fg1-a5-m1-cC_3fg1-a5-m1-cA
14 3ue6-a4-m1-cA 135 23 0.1031 0.0741 0.4348 6.2 3ue6-a4-m1-cB_3ue6-a4-m1-cA
15 3ue6-a4-m1-cD 130 23 0.1031 0.0769 0.4348 6.5 3ue6-a4-m1-cD_3ue6-a4-m1-cE, 3ue6-a4-m1-cF_3ue6-a4-m1-cD
16 3ue6-a4-m1-cE 138 23 0.1031 0.0725 0.4348 6.6 3ue6-a4-m1-cD_3ue6-a4-m1-cE
17 3ue6-a4-m1-cB 128 23 0.1031 0.0781 0.4348 6.8 3ue6-a4-m1-cB_3ue6-a4-m1-cA
18 3ue6-a4-m1-cF 127 23 0.1031 0.0787 0.4348 7.0 3ue6-a4-m1-cF_3ue6-a4-m1-cD
19 3kux-a3-m3-cA 343 35 0.1237 0.0350 0.3429 7.7 3kux-a3-m1-cA_3kux-a3-m3-cA
20 3kux-a3-m1-cA 343 35 0.1237 0.0350 0.3429 7.7 3kux-a3-m1-cA_3kux-a3-m3-cA
21 3kux-a2-m2-cA 343 35 0.1237 0.0350 0.3429 7.7 3kux-a2-m1-cA_3kux-a2-m2-cA
22 3kux-a2-m1-cA 343 35 0.1237 0.0350 0.3429 7.7 3kux-a2-m1-cA_3kux-a2-m2-cA
23 5yz0-a1-m1-cB 2362 21 0.1134 0.0047 0.5238 7.9 5yz0-a1-m1-cA_5yz0-a1-m1-cB
24 5yz0-a1-m1-cA 2362 21 0.1134 0.0047 0.5238 7.9 5yz0-a1-m1-cA_5yz0-a1-m1-cB
25 4eds-a3-m2-cB 218 84 0.2371 0.1055 0.2738 8.4 4eds-a3-m1-cA_4eds-a3-m2-cB
26 4eds-a3-m1-cA 218 84 0.2371 0.1055 0.2738 8.4 4eds-a3-m1-cA_4eds-a3-m2-cB
27 3gme-a1-m3-cA 482 43 0.1546 0.0311 0.3488 9.5 3gme-a1-m2-cA_3gme-a1-m3-cA
28 3gme-a1-m2-cA 482 43 0.1546 0.0311 0.3488 9.5 3gme-a1-m2-cA_3gme-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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