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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
SLSGTEQAEMKMAVISEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSVALLNLWV
IREGQNANMENLYTALQSIDRGEIVNMLE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2yvi-a2-m2-cA 89 89 1.0000 1.0000 1.0000 2.86e-59 2yvi-a2-m1-cA_2yvi-a2-m2-cA
2 2yvi-a2-m1-cA 89 89 1.0000 1.0000 1.0000 2.86e-59 2yvi-a2-m1-cA_2yvi-a2-m2-cA
3 4o6x-a3-m2-cB 95 84 0.5281 0.4947 0.5595 5.83e-31 4o6x-a3-m2-cB_4o6x-a3-m1-cA
4 4o6x-a3-m1-cA 98 84 0.5281 0.4796 0.5595 6.35e-31 4o6x-a3-m2-cB_4o6x-a3-m1-cA
5 3oq9-a1-m1-cI 92 76 0.2809 0.2717 0.3289 3.88e-06 3oq9-a1-m1-cH_3oq9-a1-m1-cI
6 3oq9-a1-m1-cH 92 76 0.2809 0.2717 0.3289 3.88e-06 3oq9-a1-m1-cH_3oq9-a1-m1-cI
7 2of5-a1-m1-cL 100 71 0.2697 0.2400 0.3380 5.04e-04 2of5-a1-m1-cH_2of5-a1-m1-cL
8 2of5-a1-m1-cI 100 71 0.2697 0.2400 0.3380 5.04e-04 2of5-a1-m1-cH_2of5-a1-m1-cI
9 2of5-a1-m1-cH 100 71 0.2697 0.2400 0.3380 5.04e-04 2of5-a1-m1-cH_2of5-a1-m1-cI, 2of5-a1-m1-cH_2of5-a1-m1-cL
10 6y2n-a1-m2-cA 306 36 0.1348 0.0392 0.3333 4.6 6y2n-a1-m1-cA_6y2n-a1-m2-cA
11 6y2n-a1-m1-cA 306 36 0.1348 0.0392 0.3333 4.6 6y2n-a1-m1-cA_6y2n-a1-m2-cA
12 5uyy-a2-m1-cD 365 59 0.2135 0.0521 0.3220 7.1 5uyy-a2-m1-cD_5uyy-a2-m1-cC
13 5uyy-a2-m1-cC 373 59 0.2135 0.0509 0.3220 9.1 5uyy-a2-m1-cD_5uyy-a2-m1-cC
14 7lvt-a1-m1-cD 719 35 0.1573 0.0195 0.4000 9.9 7lvt-a1-m1-cA_7lvt-a1-m1-cD, 7lvt-a1-m1-cB_7lvt-a1-m1-cD, 7lvt-a1-m1-cC_7lvt-a1-m1-cD
15 7lvt-a1-m1-cC 719 35 0.1573 0.0195 0.4000 9.9 7lvt-a1-m1-cC_7lvt-a1-m1-cD
16 7lvt-a1-m1-cB 719 35 0.1573 0.0195 0.4000 9.9 7lvt-a1-m1-cB_7lvt-a1-m1-cD
17 7lvt-a1-m1-cA 719 35 0.1573 0.0195 0.4000 9.9 7lvt-a1-m1-cA_7lvt-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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