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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=64)
SLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLE
KALN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3hp3-a3-m1-cF 65 64 1.0000 0.9846 1.0000 7.81e-43 3hp3-a3-m1-cD_3hp3-a3-m1-cF
2 4uai-a1-m1-cA 68 64 1.0000 0.9412 1.0000 8.76e-43 4uai-a1-m1-cB_4uai-a1-m1-cA
3 3hp3-a3-m1-cD 64 64 1.0000 1.0000 1.0000 9.16e-43 3hp3-a3-m1-cD_3hp3-a3-m1-cF
4 4uai-a1-m1-cB 67 64 1.0000 0.9552 1.0000 9.94e-43 4uai-a1-m1-cB_4uai-a1-m1-cA
5 5yam-a1-m1-cB 69 55 0.3281 0.3043 0.3818 1.53e-04 5yam-a1-m1-cA_5yam-a1-m1-cB
6 5yam-a1-m1-cA 69 55 0.3281 0.3043 0.3818 1.53e-04 5yam-a1-m1-cA_5yam-a1-m1-cB
7 1qe6-a3-m1-cD 72 46 0.2656 0.2361 0.3696 3.28e-04 1qe6-a3-m2-cB_1qe6-a3-m1-cD
8 1qe6-a3-m2-cB 71 46 0.2656 0.2394 0.3696 3.55e-04 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
9 1qe6-a3-m2-cA 68 46 0.2656 0.2500 0.3696 3.69e-04 1qe6-a3-m2-cA_1qe6-a3-m2-cB
10 1hrj-a1-m1-cB 68 45 0.2344 0.2206 0.3333 0.001 1hrj-a1-m1-cA_1hrj-a1-m1-cB
11 1hrj-a1-m1-cA 68 45 0.2344 0.2206 0.3333 0.001 1hrj-a1-m1-cA_1hrj-a1-m1-cB
12 2vxw-a1-m1-cD 62 43 0.2344 0.2419 0.3488 0.001 2vxw-a1-m1-cD_2vxw-a1-m1-cA, 2vxw-a1-m1-cD_2vxw-a1-m1-cB
13 2vxw-a1-m1-cB 69 43 0.2344 0.2174 0.3488 0.001 2vxw-a1-m1-cD_2vxw-a1-m1-cB
14 2vxw-a1-m1-cA 69 43 0.2344 0.2174 0.3488 0.001 2vxw-a1-m1-cD_2vxw-a1-m1-cA
15 4mhe-a2-m1-cC 61 33 0.2031 0.2131 0.3939 0.001 4mhe-a2-m1-cC_4mhe-a2-m1-cB
16 2l9h-a1-m1-cC 67 45 0.2344 0.2239 0.3333 0.001 2l9h-a1-m1-cA_2l9h-a1-m1-cC
17 2l9h-a1-m1-cA 67 45 0.2344 0.2239 0.3333 0.001 2l9h-a1-m1-cA_2l9h-a1-m1-cC
18 5l2u-a2-m2-cI 65 45 0.2344 0.2308 0.3333 0.001 5l2u-a2-m2-cG_5l2u-a2-m2-cI
19 5dnf-a1-m1-cG 65 45 0.2344 0.2308 0.3333 0.001 5dnf-a1-m1-cE_5dnf-a1-m1-cG
20 5dnf-a1-m1-cE 65 45 0.2344 0.2308 0.3333 0.001 5dnf-a1-m1-cE_5dnf-a1-m1-cG
21 5dnf-a1-m1-cD 65 45 0.2344 0.2308 0.3333 0.001 5dnf-a1-m1-cA_5dnf-a1-m1-cD
22 5dnf-a1-m1-cA 65 45 0.2344 0.2308 0.3333 0.001 5dnf-a1-m1-cA_5dnf-a1-m1-cD
23 3n52-a3-m1-cD 70 63 0.3125 0.2857 0.3175 0.001 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
24 6aez-a1-m3-cA 64 45 0.2344 0.2344 0.3333 0.001 6aez-a1-m2-cA_6aez-a1-m3-cA
25 6aez-a1-m2-cA 64 45 0.2344 0.2344 0.3333 0.001 6aez-a1-m2-cA_6aez-a1-m3-cA
26 5l2u-a2-m2-cH 64 45 0.2344 0.2344 0.3333 0.001 5l2u-a2-m2-cG_5l2u-a2-m2-cH
27 5l2u-a2-m2-cG 64 45 0.2344 0.2344 0.3333 0.001 5l2u-a2-m2-cG_5l2u-a2-m2-cH, 5l2u-a2-m2-cG_5l2u-a2-m2-cI
28 3n52-a3-m1-cB 71 63 0.3125 0.2817 0.3175 0.001 3n52-a3-m1-cD_3n52-a3-m1-cB
29 3n52-a3-m1-cC 67 62 0.3125 0.2985 0.3226 0.001 3n52-a3-m1-cC_3n52-a3-m1-cD
30 1mi2-a1-m1-cB 73 63 0.3125 0.2740 0.3175 0.002 1mi2-a1-m1-cA_1mi2-a1-m1-cB
31 1mi2-a1-m1-cA 73 63 0.3125 0.2740 0.3175 0.002 1mi2-a1-m1-cA_1mi2-a1-m1-cB
32 4mhe-a2-m1-cB 69 34 0.2031 0.1884 0.3824 0.002 4mhe-a2-m1-cC_4mhe-a2-m1-cB
33 6log-a1-m2-cA 63 43 0.2344 0.2381 0.3488 0.002 6log-a1-m1-cA_6log-a1-m2-cA
34 6log-a1-m1-cA 63 43 0.2344 0.2381 0.3488 0.002 6log-a1-m1-cA_6log-a1-m2-cA
35 5ltl-a1-m1-cB 68 31 0.1875 0.1765 0.3871 0.004 5ltl-a1-m1-cA_5ltl-a1-m1-cB
36 5ltl-a1-m1-cA 67 31 0.1875 0.1791 0.3871 0.005 5ltl-a1-m1-cA_5ltl-a1-m1-cB
37 1rod-a1-m1-cB 72 47 0.2344 0.2083 0.3191 0.007 1rod-a1-m1-cA_1rod-a1-m1-cB
38 1rod-a1-m1-cA 72 47 0.2344 0.2083 0.3191 0.007 1rod-a1-m1-cA_1rod-a1-m1-cB
39 2mgs-a1-m1-cB 71 62 0.2656 0.2394 0.2742 0.007 2mgs-a1-m1-cA_2mgs-a1-m1-cB
40 2mgs-a1-m1-cA 71 62 0.2656 0.2394 0.2742 0.007 2mgs-a1-m1-cA_2mgs-a1-m1-cB
41 2ra4-a4-m4-cB 65 36 0.1719 0.1692 0.3056 0.009 2ra4-a4-m2-cB_2ra4-a4-m4-cB
42 2ra4-a4-m2-cB 65 36 0.1719 0.1692 0.3056 0.009 2ra4-a4-m2-cB_2ra4-a4-m4-cB
43 2ra4-a2-m4-cB 65 36 0.1719 0.1692 0.3056 0.009 2ra4-a2-m4-cA_2ra4-a2-m4-cB
44 2ra4-a2-m4-cA 65 36 0.1719 0.1692 0.3056 0.009 2ra4-a2-m4-cA_2ra4-a2-m4-cB
45 1ncv-a1-m1-cB 76 58 0.1875 0.1579 0.2069 0.009 1ncv-a1-m1-cA_1ncv-a1-m1-cB
46 1ncv-a1-m1-cA 76 58 0.1875 0.1579 0.2069 0.009 1ncv-a1-m1-cA_1ncv-a1-m1-cB
47 1tvx-a1-m1-cC 64 62 0.2656 0.2656 0.2742 0.032 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
48 1tvx-a1-m1-cA 64 62 0.2656 0.2656 0.2742 0.032 1tvx-a1-m1-cA_1tvx-a1-m1-cC
49 1tvx-a1-m1-cD 71 61 0.2656 0.2394 0.2787 0.032 1tvx-a1-m1-cB_1tvx-a1-m1-cD, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
50 1tvx-a1-m1-cB 71 61 0.2656 0.2394 0.2787 0.032 1tvx-a1-m1-cB_1tvx-a1-m1-cD
51 1msh-a1-m1-cB 72 62 0.2812 0.2500 0.2903 0.046 1msh-a1-m1-cA_1msh-a1-m1-cB
52 1msh-a1-m1-cA 72 62 0.2812 0.2500 0.2903 0.046 1msh-a1-m1-cA_1msh-a1-m1-cB
53 6wzk-a1-m1-cF 64 62 0.2812 0.2812 0.2903 0.087 6wzk-a1-m1-cE_6wzk-a1-m1-cF
54 6wzk-a1-m1-cE 64 62 0.2812 0.2812 0.2903 0.087 6wzk-a1-m1-cE_6wzk-a1-m1-cF
55 1pfn-a1-m1-cD 68 62 0.2812 0.2647 0.2903 0.35 1pfn-a1-m1-cB_1pfn-a1-m1-cD
56 1pfn-a1-m1-cC 68 62 0.2812 0.2647 0.2903 0.35 1pfn-a1-m1-cB_1pfn-a1-m1-cC
57 1pfn-a1-m1-cB 68 62 0.2812 0.2647 0.2903 0.35 1pfn-a1-m1-cB_1pfn-a1-m1-cC, 1pfn-a1-m1-cB_1pfn-a1-m1-cD
58 2q8r-a2-m1-cG 63 30 0.1250 0.1270 0.2667 0.73 2q8r-a2-m1-cF_2q8r-a2-m1-cG
59 2q8r-a2-m1-cF 63 30 0.1250 0.1270 0.2667 0.73 2q8r-a2-m1-cF_2q8r-a2-m1-cG
60 6wzj-a1-m1-cF 59 62 0.2812 0.3051 0.2903 1.1 6wzj-a1-m1-cF_6wzj-a1-m1-cE
61 2r3z-a1-m1-cD 64 28 0.1406 0.1406 0.3214 1.2 2r3z-a1-m1-cD_2r3z-a1-m1-cA
62 2r3z-a1-m1-cB 67 28 0.1406 0.1343 0.3214 1.4 2r3z-a1-m1-cB_2r3z-a1-m1-cA
63 2r3z-a1-m1-cA 68 28 0.1406 0.1324 0.3214 1.4 2r3z-a1-m1-cB_2r3z-a1-m1-cA, 2r3z-a1-m1-cD_2r3z-a1-m1-cA
64 6wzj-a1-m1-cE 63 62 0.2500 0.2540 0.2581 2.0 6wzj-a1-m1-cF_6wzj-a1-m1-cE
65 2jp1-a1-m1-cB 60 43 0.1562 0.1667 0.2326 2.0 2jp1-a1-m1-cA_2jp1-a1-m1-cB
66 2jp1-a1-m1-cA 60 43 0.1562 0.1667 0.2326 2.0 2jp1-a1-m1-cA_2jp1-a1-m1-cB
67 4r9y-a1-m1-cD 65 62 0.2656 0.2615 0.2742 2.3 4r9y-a1-m1-cB_4r9y-a1-m1-cD
68 4r9y-a1-m1-cB 65 62 0.2656 0.2615 0.2742 2.3 4r9y-a1-m1-cB_4r9y-a1-m1-cD
69 4r9w-a1-m2-cB 64 62 0.2656 0.2656 0.2742 2.5 4r9w-a1-m1-cA_4r9w-a1-m2-cB, 4r9w-a1-m2-cA_4r9w-a1-m2-cB
70 1f9q-a1-m1-cC 62 62 0.2656 0.2742 0.2742 2.7 1f9q-a1-m1-cB_1f9q-a1-m1-cC
71 1f9q-a1-m1-cB 62 62 0.2656 0.2742 0.2742 2.7 1f9q-a1-m1-cB_1f9q-a1-m1-cC
72 4r9w-a1-m2-cA 62 62 0.2656 0.2742 0.2742 2.9 4r9w-a1-m2-cA_4r9w-a1-m2-cB
73 4r9w-a1-m1-cA 62 62 0.2656 0.2742 0.2742 2.9 4r9w-a1-m1-cA_4r9w-a1-m2-cB
74 1esr-a1-m2-cA 75 59 0.1875 0.1600 0.2034 4.0 1esr-a1-m1-cA_1esr-a1-m2-cA
75 1esr-a1-m1-cA 75 59 0.1875 0.1600 0.2034 4.0 1esr-a1-m1-cA_1esr-a1-m2-cA
76 7s5a-a1-m1-cB 76 59 0.1875 0.1579 0.2034 4.2 7s5a-a1-m1-cA_7s5a-a1-m1-cB
77 7s5a-a1-m1-cA 73 59 0.1875 0.1644 0.2034 4.3 7s5a-a1-m1-cA_7s5a-a1-m1-cB
78 2n54-a1-m1-cB 66 43 0.1562 0.1515 0.2326 4.5 2n54-a1-m1-cA_2n54-a1-m1-cB
79 2n54-a1-m1-cA 66 43 0.1562 0.1515 0.2326 4.5 2n54-a1-m1-cA_2n54-a1-m1-cB
80 1f2l-a1-m1-cD 70 34 0.1250 0.1143 0.2353 5.5 1f2l-a1-m1-cA_1f2l-a1-m1-cD, 1f2l-a1-m1-cC_1f2l-a1-m1-cD
81 1f2l-a1-m1-cC 64 34 0.1250 0.1250 0.2353 6.1 1f2l-a1-m1-cC_1f2l-a1-m1-cD
82 1f2l-a1-m1-cA 64 34 0.1250 0.1250 0.2353 6.1 1f2l-a1-m1-cA_1f2l-a1-m1-cD
83 5eki-a7-m1-cF 70 52 0.2188 0.2000 0.2692 7.3 5eki-a7-m1-cF_5eki-a7-m1-cA
84 5eki-a7-m1-cA 72 52 0.2188 0.1944 0.2692 7.9 5eki-a7-m1-cF_5eki-a7-m1-cA

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Reference:
Jacob Schwartz et al.

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