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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
SMAQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELS
PKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3o9o-a1-m1-cB 96 96 1.0000 1.0000 1.0000 1.37e-64 3o9o-a1-m1-cA_3o9o-a1-m1-cB
2 3o9o-a1-m1-cA 92 92 0.9583 1.0000 1.0000 1.50e-61 3o9o-a1-m1-cA_3o9o-a1-m1-cB
3 2vs0-a1-m1-cB 83 81 0.4062 0.4699 0.4815 1.82e-23 2vs0-a1-m1-cA_2vs0-a1-m1-cB
4 2vs0-a1-m1-cA 81 79 0.3958 0.4691 0.4810 9.50e-23 2vs0-a1-m1-cA_2vs0-a1-m1-cB
5 3zbh-a3-m1-cD 93 91 0.4062 0.4194 0.4286 1.47e-18 3zbh-a3-m1-cC_3zbh-a3-m1-cD
6 3zbh-a3-m1-cC 90 88 0.3854 0.4111 0.4205 9.98e-17 3zbh-a3-m1-cC_3zbh-a3-m1-cD
7 6gir-a1-m2-cA 406 85 0.2396 0.0567 0.2706 0.21 6gir-a1-m1-cA_6gir-a1-m2-cA
8 6gir-a1-m1-cA 406 85 0.2396 0.0567 0.2706 0.21 6gir-a1-m1-cA_6gir-a1-m2-cA
9 8glv-a1-m1-cCp 1075 88 0.2708 0.0242 0.2955 2.6 8glv-a1-m1-cCp_8glv-a1-m1-cCq
10 8glv-a1-m1-cCq 1076 88 0.2708 0.0242 0.2955 2.7 8glv-a1-m1-cCp_8glv-a1-m1-cCq
11 6mtk-a1-m2-cA 311 65 0.2188 0.0675 0.3231 3.0 6mtk-a1-m1-cA_6mtk-a1-m2-cA
12 6mtk-a1-m1-cA 311 65 0.2188 0.0675 0.3231 3.0 6mtk-a1-m1-cA_6mtk-a1-m2-cA
13 5nl1-a3-m1-cD 141 63 0.1875 0.1277 0.2857 3.5 5nl1-a3-m1-cD_5nl1-a3-m1-cF
14 5nl1-a3-m1-cF 142 63 0.1875 0.1268 0.2857 3.5 5nl1-a3-m1-cD_5nl1-a3-m1-cF
15 2xcq-a1-m2-cA 652 41 0.1562 0.0230 0.3659 9.3 2xcq-a1-m1-cA_2xcq-a1-m2-cA
16 2xcq-a1-m1-cA 652 41 0.1562 0.0230 0.3659 9.3 2xcq-a1-m1-cA_2xcq-a1-m2-cA
17 2ntz-a1-m1-cA 177 62 0.1458 0.0791 0.2258 10.0 2ntz-a1-m1-cB_2ntz-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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