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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
SMKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGEN
IVGWRHYDVAKKLKELKKEELFTMKLIEPKKSSEA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3gge-a2-m2-cC 95 95 1.0000 1.0000 1.0000 1.85e-64 3gge-a2-m1-cB_3gge-a2-m2-cC, 3gge-a2-m2-cA_3gge-a2-m2-cC, 3gge-a2-m2-cB_3gge-a2-m2-cC
2 3gge-a2-m2-cA 95 95 1.0000 1.0000 1.0000 1.85e-64 3gge-a2-m2-cA_3gge-a2-m2-cC, 3gge-a2-m2-cB_3gge-a2-m2-cA
3 3gge-a2-m2-cB 92 92 0.9684 1.0000 1.0000 3.61e-62 3gge-a2-m2-cB_3gge-a2-m2-cA, 3gge-a2-m2-cB_3gge-a2-m2-cC
4 3gge-a2-m1-cB 92 92 0.9684 1.0000 1.0000 3.61e-62 3gge-a2-m1-cB_3gge-a2-m2-cC
5 5v6t-a2-m5-cB 161 90 0.6000 0.3540 0.6333 3.28e-37 5v6t-a2-m2-cB_5v6t-a2-m5-cB
6 5v6t-a2-m2-cB 161 90 0.6000 0.3540 0.6333 3.28e-37 5v6t-a2-m2-cB_5v6t-a2-m5-cB
7 1kwa-a5-m1-cA 88 64 0.2000 0.2159 0.2969 6.39e-06 1kwa-a5-m2-cB_1kwa-a5-m1-cA
8 1kwa-a4-m1-cA 88 64 0.2000 0.2159 0.2969 6.39e-06 1kwa-a4-m1-cB_1kwa-a4-m1-cA
9 7qrt-a1-m1-cA 92 67 0.2316 0.2391 0.3284 3.65e-04 7qrt-a1-m1-cB_7qrt-a1-m1-cA
10 7qrt-a1-m1-cB 91 67 0.2316 0.2418 0.3284 3.78e-04 7qrt-a1-m1-cB_7qrt-a1-m1-cA
11 1kwa-a5-m2-cB 86 64 0.1895 0.2093 0.2812 0.001 1kwa-a5-m2-cB_1kwa-a5-m1-cA
12 1kwa-a4-m1-cB 86 64 0.1895 0.2093 0.2812 0.001 1kwa-a4-m1-cB_1kwa-a4-m1-cA
13 2vrf-a6-m1-cD 95 58 0.1895 0.1895 0.3103 0.019 2vrf-a6-m1-cC_2vrf-a6-m1-cD
14 2vrf-a6-m1-cC 95 58 0.1895 0.1895 0.3103 0.019 2vrf-a6-m1-cC_2vrf-a6-m1-cD
15 3o46-a1-m3-cA 83 82 0.2526 0.2892 0.2927 0.071 3o46-a1-m2-cA_3o46-a1-m3-cA
16 3o46-a1-m2-cA 83 82 0.2526 0.2892 0.2927 0.071 3o46-a1-m2-cA_3o46-a1-m3-cA
17 6nek-a1-m2-cA 86 69 0.2000 0.2209 0.2754 0.075 6nek-a1-m1-cA_6nek-a1-m2-cA
18 6nek-a1-m1-cA 86 69 0.2000 0.2209 0.2754 0.075 6nek-a1-m1-cA_6nek-a1-m2-cA
19 3lny-a1-m6-cA 94 73 0.2211 0.2234 0.2877 0.088 3lny-a1-m3-cA_3lny-a1-m6-cA, 3lny-a1-m5-cA_3lny-a1-m6-cA
20 3lny-a1-m5-cA 94 73 0.2211 0.2234 0.2877 0.088 3lny-a1-m5-cA_3lny-a1-m6-cA
21 3lny-a1-m3-cA 94 73 0.2211 0.2234 0.2877 0.088 3lny-a1-m3-cA_3lny-a1-m6-cA
22 6bjo-a1-m1-cA 86 34 0.1474 0.1628 0.4118 0.11 6bjo-a1-m1-cB_6bjo-a1-m1-cA
23 3hpk-a3-m1-cA 112 34 0.1474 0.1250 0.4118 0.11 3hpk-a3-m1-cB_3hpk-a3-m1-cA
24 6bjo-a1-m1-cB 85 34 0.1474 0.1647 0.4118 0.12 6bjo-a1-m1-cB_6bjo-a1-m1-cA
25 3hpk-a3-m1-cB 107 34 0.1474 0.1308 0.4118 0.12 3hpk-a3-m1-cB_3hpk-a3-m1-cA
26 7qsb-a1-m1-cA 84 69 0.1895 0.2143 0.2609 0.21 7qsb-a1-m1-cB_7qsb-a1-m1-cA
27 7mfw-a2-m2-cB 98 70 0.1789 0.1735 0.2429 0.43 7mfw-a2-m1-cA_7mfw-a2-m2-cB
28 7mfw-a1-m1-cB 98 70 0.1789 0.1735 0.2429 0.43 7mfw-a1-m1-cA_7mfw-a1-m1-cB
29 7mfw-a2-m1-cA 93 70 0.1789 0.1828 0.2429 0.51 7mfw-a2-m1-cA_7mfw-a2-m2-cB
30 7mfw-a1-m1-cA 93 70 0.1789 0.1828 0.2429 0.51 7mfw-a1-m1-cA_7mfw-a1-m1-cB
31 2ego-a1-m1-cA 88 57 0.1684 0.1818 0.2807 0.71 2ego-a1-m1-cA_2ego-a1-m1-cB
32 3qe1-a1-m2-cA 102 94 0.2632 0.2451 0.2660 0.76 3qe1-a1-m1-cA_3qe1-a1-m2-cA
33 3qe1-a1-m1-cA 102 94 0.2632 0.2451 0.2660 0.76 3qe1-a1-m1-cA_3qe1-a1-m2-cA
34 3axa-a2-m3-cB 97 56 0.1684 0.1649 0.2857 0.77 3axa-a2-m1-cB_3axa-a2-m3-cB
35 3axa-a2-m1-cB 97 56 0.1684 0.1649 0.2857 0.77 3axa-a2-m1-cB_3axa-a2-m3-cB
36 3qdo-a1-m2-cA 109 98 0.2737 0.2385 0.2653 0.84 3qdo-a1-m1-cA_3qdo-a1-m2-cA
37 3qdo-a1-m1-cA 109 98 0.2737 0.2385 0.2653 0.84 3qdo-a1-m1-cA_3qdo-a1-m2-cA
38 8ah6-a1-m1-cB 102 70 0.2211 0.2059 0.3000 0.89 8ah6-a1-m1-cA_8ah6-a1-m1-cB
39 2ego-a1-m1-cB 90 57 0.1684 0.1778 0.2807 0.89 2ego-a1-m1-cA_2ego-a1-m1-cB
40 5jxb-a1-m1-cC 119 70 0.2211 0.1765 0.3000 0.95 5jxb-a1-m1-cA_5jxb-a1-m1-cC
41 5jxb-a1-m1-cA 117 70 0.2211 0.1795 0.3000 0.96 5jxb-a1-m1-cA_5jxb-a1-m1-cC
42 8ah6-a1-m1-cA 101 70 0.2211 0.2079 0.3000 0.97 8ah6-a1-m1-cA_8ah6-a1-m1-cB
43 7qcr-a1-m1-cA 87 61 0.1684 0.1839 0.2623 1.0 7qcr-a1-m1-cB_7qcr-a1-m1-cA
44 7qcr-a1-m1-cB 86 61 0.1684 0.1860 0.2623 1.2 7qcr-a1-m1-cB_7qcr-a1-m1-cA
45 3bpd-a2-m1-cM 90 48 0.2000 0.2111 0.3958 1.2 3bpd-a2-m1-cN_3bpd-a2-m1-cM
46 3bpd-a2-m1-cN 89 48 0.2000 0.2135 0.3958 1.3 3bpd-a2-m1-cN_3bpd-a2-m1-cM
47 1tp5-a2-m2-cA 115 70 0.2211 0.1826 0.3000 1.3 1tp5-a2-m1-cA_1tp5-a2-m2-cA
48 1tp5-a2-m1-cA 115 70 0.2211 0.1826 0.3000 1.3 1tp5-a2-m1-cA_1tp5-a2-m2-cA
49 3khf-a3-m1-cA 96 24 0.1263 0.1250 0.5000 2.0 3khf-a3-m1-cA_3khf-a3-m1-cB
50 3khf-a3-m1-cB 97 24 0.1263 0.1237 0.5000 2.0 3khf-a3-m1-cA_3khf-a3-m1-cB
51 4q2n-a3-m1-cE 97 80 0.2526 0.2474 0.3000 2.1 4q2n-a3-m1-cE_4q2n-a3-m1-cF
52 4q2n-a3-m1-cF 98 81 0.2526 0.2449 0.2963 2.6 4q2n-a3-m1-cE_4q2n-a3-m1-cF
53 4q2p-a1-m1-cC 80 34 0.1158 0.1375 0.3235 3.0 4q2p-a1-m1-cC_4q2p-a1-m1-cA
54 4q2p-a1-m1-cB 87 34 0.1158 0.1264 0.3235 3.1 4q2p-a1-m1-cB_4q2p-a1-m1-cA
55 4q2p-a1-m1-cA 98 34 0.1158 0.1122 0.3235 3.4 4q2p-a1-m1-cB_4q2p-a1-m1-cA, 4q2p-a1-m1-cC_4q2p-a1-m1-cA
56 2xkx-a1-m1-cB 718 70 0.2211 0.0292 0.3000 3.6 2xkx-a1-m1-cB_2xkx-a1-m1-cA
57 2xkx-a1-m1-cA 721 70 0.2211 0.0291 0.3000 3.8 2xkx-a1-m1-cB_2xkx-a1-m1-cA
58 3dj1-a3-m1-cA 115 57 0.1579 0.1304 0.2632 4.1 3dj1-a3-m6-cB_3dj1-a3-m1-cA
59 4dyw-a3-m1-cB 129 26 0.1053 0.0775 0.3846 4.2 4dyw-a3-m1-cA_4dyw-a3-m1-cB
60 4dyw-a3-m1-cA 129 26 0.1053 0.0775 0.3846 4.2 4dyw-a3-m1-cA_4dyw-a3-m1-cB
61 1y4u-a1-m1-cB 454 45 0.1895 0.0396 0.4000 5.4 1y4u-a1-m1-cB_1y4u-a1-m1-cA
62 7qsb-a1-m1-cB 80 57 0.1579 0.1875 0.2632 5.8 7qsb-a1-m1-cB_7qsb-a1-m1-cA
63 2fne-a4-m1-cB 100 76 0.1895 0.1800 0.2368 6.4 2fne-a4-m1-cB_2fne-a4-m2-cC
64 2fne-a4-m2-cC 104 76 0.1895 0.1731 0.2368 7.0 2fne-a4-m1-cB_2fne-a4-m2-cC
65 3ps4-a2-m1-cC 96 25 0.1053 0.1042 0.4000 7.3 3ps4-a2-m1-cC_3ps4-a2-m1-cB
66 3ps4-a2-m1-cB 97 25 0.1053 0.1031 0.4000 7.6 3ps4-a2-m1-cC_3ps4-a2-m1-cB
67 2ygy-a1-m1-cD 299 16 0.0947 0.0301 0.5625 7.9 2ygy-a1-m1-cA_2ygy-a1-m1-cD
68 2ygy-a1-m1-cA 299 16 0.0947 0.0301 0.5625 7.9 2ygy-a1-m1-cA_2ygy-a1-m1-cD
69 1fdy-a1-m1-cD 291 16 0.0947 0.0309 0.5625 8.0 1fdy-a1-m1-cB_1fdy-a1-m1-cD
70 1fdy-a1-m1-cB 291 16 0.0947 0.0309 0.5625 8.0 1fdy-a1-m1-cB_1fdy-a1-m1-cD
71 5vwi-a1-m1-cB 87 85 0.2211 0.2414 0.2471 8.4 5vwi-a1-m1-cB_5vwi-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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