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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
SMKKIEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGTLLAKVKVEIVAHDAAVEEMI
TTISQAVKTGEVGDGKIFVSPVDEIVRI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3l7p-a1-m1-cF 88 88 1.0000 1.0000 1.0000 6.59e-57 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
2 3l7p-a1-m1-cB 88 87 0.9886 0.9886 1.0000 3.13e-56 3l7p-a1-m1-cB_3l7p-a1-m1-cF
3 3l7p-a1-m1-cC 91 91 0.9886 0.9560 0.9560 1.56e-52 3l7p-a1-m1-cF_3l7p-a1-m1-cC
4 4c3l-a1-m3-cA 89 87 0.5795 0.5730 0.5862 2.95e-26 4c3l-a1-m2-cA_4c3l-a1-m3-cA
5 4c3l-a1-m2-cA 89 87 0.5795 0.5730 0.5862 2.95e-26 4c3l-a1-m2-cA_4c3l-a1-m3-cA
6 2xul-a1-m1-cA 106 96 0.5909 0.4906 0.5417 6.22e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
7 2xul-a1-m1-cC 107 97 0.5909 0.4860 0.5361 9.79e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
8 1ul3-a2-m3-cD 95 88 0.5341 0.4947 0.5341 4.37e-25 1ul3-a2-m2-cD_1ul3-a2-m3-cD
9 1ul3-a2-m2-cD 95 88 0.5341 0.4947 0.5341 4.37e-25 1ul3-a2-m2-cD_1ul3-a2-m3-cD
10 1ul3-a3-m4-cB 94 87 0.5227 0.4894 0.5287 3.71e-24 1ul3-a3-m4-cB_1ul3-a3-m5-cA
11 1ul3-a3-m1-cC 94 87 0.5227 0.4894 0.5287 3.71e-24 1ul3-a3-m1-cC_1ul3-a3-m5-cA
12 1ul3-a3-m5-cA 95 87 0.5227 0.4842 0.5287 4.07e-24 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
13 3ncp-a6-m5-cD 99 90 0.5682 0.5051 0.5556 4.59e-24 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
14 3ncp-a6-m4-cD 99 90 0.5682 0.5051 0.5556 4.59e-24 3ncp-a6-m4-cD_3ncp-a6-m5-cD
15 3ncp-a6-m4-cC 100 90 0.5682 0.5000 0.5556 4.82e-24 3ncp-a6-m5-cD_3ncp-a6-m4-cC
16 3n5b-a1-m3-cA 112 103 0.5455 0.4286 0.4660 2.98e-23 3n5b-a1-m2-cA_3n5b-a1-m3-cA
17 3n5b-a1-m2-cA 112 103 0.5455 0.4286 0.4660 2.98e-23 3n5b-a1-m2-cA_3n5b-a1-m3-cA
18 2gw8-a1-m3-cA 99 90 0.5227 0.4646 0.5111 6.05e-23 2gw8-a1-m2-cA_2gw8-a1-m3-cA
19 2gw8-a1-m2-cA 99 90 0.5227 0.4646 0.5111 6.05e-23 2gw8-a1-m2-cA_2gw8-a1-m3-cA
20 2eg2-a2-m9-cA 95 87 0.5227 0.4842 0.5287 7.06e-23 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
21 2eg2-a2-m6-cA 95 87 0.5227 0.4842 0.5287 7.06e-23 2eg2-a2-m6-cA_2eg2-a2-m9-cA
22 2eg2-a2-m5-cA 95 87 0.5227 0.4842 0.5287 7.06e-23 2eg2-a2-m5-cA_2eg2-a2-m9-cA
23 7p4v-a1-m3-cA 113 104 0.5114 0.3982 0.4327 1.68e-21 7p4v-a1-m2-cA_7p4v-a1-m3-cA
24 7p4v-a1-m2-cA 113 104 0.5114 0.3982 0.4327 1.68e-21 7p4v-a1-m2-cA_7p4v-a1-m3-cA
25 2o66-a2-m2-cC 106 85 0.4545 0.3774 0.4706 3.49e-21 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
26 2o66-a2-m2-cA 107 87 0.4659 0.3832 0.4713 2.85e-20 2o66-a2-m2-cC_2o66-a2-m2-cA
27 2o66-a2-m1-cA 107 87 0.4659 0.3832 0.4713 2.85e-20 2o66-a2-m2-cC_2o66-a2-m1-cA
28 3bzq-a1-m3-cA 99 88 0.4318 0.3838 0.4318 3.27e-20 3bzq-a1-m2-cA_3bzq-a1-m3-cA
29 3bzq-a1-m2-cA 99 88 0.4318 0.3838 0.4318 3.27e-20 3bzq-a1-m2-cA_3bzq-a1-m3-cA
30 3t9z-a2-m1-cF 94 87 0.4886 0.4574 0.4943 3.93e-20 3t9z-a2-m1-cD_3t9z-a2-m1-cF
31 3t9z-a2-m1-cD 93 87 0.4886 0.4624 0.4943 4.37e-20 3t9z-a2-m1-cD_3t9z-a2-m1-cF
32 3lf0-a1-m1-cC 101 91 0.4318 0.3762 0.4176 6.86e-20 3lf0-a1-m1-cC_3lf0-a1-m1-cB
33 7p50-a1-m1-cC 115 103 0.4773 0.3652 0.4078 8.85e-20 7p50-a1-m1-cB_7p50-a1-m1-cC
34 7p50-a1-m1-cB 115 103 0.4773 0.3652 0.4078 8.85e-20 7p50-a1-m1-cB_7p50-a1-m1-cC
35 5l9n-a1-m3-cA 92 87 0.4886 0.4674 0.4943 1.56e-19 5l9n-a1-m2-cA_5l9n-a1-m3-cA
36 5l9n-a1-m2-cA 92 87 0.4886 0.4674 0.4943 1.56e-19 5l9n-a1-m2-cA_5l9n-a1-m3-cA
37 7p52-a1-m3-cA 111 102 0.4886 0.3874 0.4216 9.46e-19 7p52-a1-m2-cA_7p52-a1-m3-cA
38 7p52-a1-m2-cA 111 102 0.4886 0.3874 0.4216 9.46e-19 7p52-a1-m2-cA_7p52-a1-m3-cA
39 3lf0-a1-m1-cB 112 102 0.4318 0.3393 0.3725 5.66e-18 3lf0-a1-m1-cC_3lf0-a1-m1-cB
40 2pii-a1-m3-cA 112 103 0.5000 0.3929 0.4272 8.28e-18 2pii-a1-m2-cA_2pii-a1-m3-cA
41 2pii-a1-m2-cA 112 103 0.5000 0.3929 0.4272 8.28e-18 2pii-a1-m2-cA_2pii-a1-m3-cA
42 2rd5-a1-m3-cD 126 102 0.4659 0.3254 0.4020 1.14e-17 2rd5-a1-m2-cD_2rd5-a1-m3-cD
43 2rd5-a1-m2-cD 126 102 0.4659 0.3254 0.4020 1.14e-17 2rd5-a1-m2-cD_2rd5-a1-m3-cD
44 3ta2-a2-m5-cB 109 103 0.4886 0.3945 0.4175 1.94e-17 3ta2-a2-m4-cB_3ta2-a2-m5-cB
45 3ta2-a2-m4-cB 109 103 0.4886 0.3945 0.4175 1.94e-17 3ta2-a2-m4-cB_3ta2-a2-m5-cB
46 2gnk-a2-m3-cA 95 87 0.4318 0.4000 0.4368 2.85e-17 2gnk-a2-m2-cA_2gnk-a2-m3-cA
47 2gnk-a2-m2-cA 95 87 0.4318 0.4000 0.4368 2.85e-17 2gnk-a2-m2-cA_2gnk-a2-m3-cA
48 4cnz-a1-m1-cB 100 91 0.4545 0.4000 0.4396 5.17e-17 4cnz-a1-m1-cA_4cnz-a1-m1-cB
49 4cnz-a1-m1-cA 100 91 0.4545 0.4000 0.4396 5.17e-17 4cnz-a1-m1-cA_4cnz-a1-m1-cB
50 1ufl-a2-m2-cC 99 93 0.4545 0.4040 0.4301 7.27e-16 1ufl-a2-m2-cC_1ufl-a2-m1-cA
51 1v3r-a1-m1-cA 92 87 0.4432 0.4239 0.4483 7.42e-16 1v3r-a1-m1-cC_1v3r-a1-m1-cA
52 1v3r-a1-m1-cC 90 87 0.4432 0.4333 0.4483 7.45e-16 1v3r-a1-m1-cC_1v3r-a1-m1-cA
53 2ns1-a1-m3-cB 113 104 0.4432 0.3451 0.3750 1.33e-15 2ns1-a1-m2-cB_2ns1-a1-m3-cB
54 2ns1-a1-m2-cB 113 104 0.4432 0.3451 0.3750 1.33e-15 2ns1-a1-m2-cB_2ns1-a1-m3-cB
55 7o4x-a1-m3-cA 103 91 0.4318 0.3689 0.4176 2.96e-15 7o4x-a1-m2-cA_7o4x-a1-m3-cA
56 7o4x-a1-m2-cA 103 91 0.4318 0.3689 0.4176 2.96e-15 7o4x-a1-m2-cA_7o4x-a1-m3-cA
57 4co2-a2-m3-cA 112 103 0.4545 0.3571 0.3883 3.64e-15 4co2-a2-m2-cA_4co2-a2-m3-cA
58 4co2-a2-m2-cA 112 103 0.4545 0.3571 0.3883 3.64e-15 4co2-a2-m2-cA_4co2-a2-m3-cA
59 2nuu-a4-m2-cK 112 103 0.4318 0.3393 0.3689 5.62e-15 2nuu-a4-m1-cH_2nuu-a4-m2-cK
60 2nuu-a4-m1-cH 112 103 0.4318 0.3393 0.3689 5.62e-15 2nuu-a4-m1-cH_2nuu-a4-m2-cK
61 1ufl-a2-m1-cA 108 103 0.4545 0.3704 0.3883 2.72e-14 1ufl-a2-m2-cC_1ufl-a2-m1-cA
62 1hwu-a3-m1-cA 99 90 0.4318 0.3838 0.4222 6.93e-14 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
63 1hwu-a3-m2-cD 99 90 0.4205 0.3737 0.4111 1.34e-12 1hwu-a3-m1-cA_1hwu-a3-m2-cD
64 4ozn-a1-m1-cC 113 96 0.4432 0.3451 0.4062 4.61e-11 4ozn-a1-m1-cC_4ozn-a1-m1-cA
65 1hwu-a3-m2-cE 84 87 0.3977 0.4167 0.4023 6.52e-11 1hwu-a3-m2-cE_1hwu-a3-m2-cF
66 1hwu-a3-m2-cF 91 87 0.3977 0.3846 0.4023 8.10e-11 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
67 4usj-a1-m3-cD 142 102 0.4205 0.2606 0.3627 1.01e-10 4usj-a1-m2-cD_4usj-a1-m3-cD
68 4usj-a1-m2-cD 142 102 0.4205 0.2606 0.3627 1.01e-10 4usj-a1-m2-cD_4usj-a1-m3-cD
69 4ozn-a1-m1-cA 116 100 0.4432 0.3362 0.3900 1.75e-10 4ozn-a1-m1-cC_4ozn-a1-m1-cA
70 4r25-a1-m3-cA 114 103 0.3523 0.2719 0.3010 2.14e-07 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 103 0.3523 0.2719 0.3010 2.14e-07 4r25-a1-m2-cA_4r25-a1-m3-cA
72 4wk1-a1-m3-cA 92 87 0.3068 0.2935 0.3103 0.016 4wk1-a1-m2-cA_4wk1-a1-m3-cA
73 4wk1-a1-m2-cA 92 87 0.3068 0.2935 0.3103 0.016 4wk1-a1-m2-cA_4wk1-a1-m3-cA
74 4d3h-a1-m1-cC 101 94 0.3182 0.2772 0.2979 0.21 4d3h-a1-m1-cC_4d3h-a1-m1-cA, 4d3h-a1-m1-cC_4d3h-a1-m1-cB
75 4d3h-a1-m1-cA 103 96 0.3068 0.2621 0.2812 0.59 4d3h-a1-m1-cC_4d3h-a1-m1-cA
76 4gek-a1-m1-cA 230 51 0.1932 0.0739 0.3333 0.59 4gek-a1-m1-cA_4gek-a1-m1-cG
77 4gek-a1-m1-cG 231 39 0.1477 0.0563 0.3333 0.77 4gek-a1-m1-cA_4gek-a1-m1-cG
78 2rdy-a1-m1-cB 769 38 0.1705 0.0195 0.3947 1.0 2rdy-a1-m1-cA_2rdy-a1-m1-cB
79 2rdy-a1-m1-cA 769 38 0.1705 0.0195 0.3947 1.0 2rdy-a1-m1-cA_2rdy-a1-m1-cB
80 4d3h-a1-m1-cB 104 98 0.3068 0.2596 0.2755 1.1 4d3h-a1-m1-cC_4d3h-a1-m1-cB
81 6bz0-a2-m1-cD 469 82 0.2955 0.0554 0.3171 1.6 6bz0-a2-m1-cC_6bz0-a2-m1-cD
82 6bz0-a2-m1-cC 468 82 0.2955 0.0556 0.3171 1.6 6bz0-a2-m1-cC_6bz0-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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