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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
SMKLQQLRYIWEVAHHDLNVSATAQSLYTSQPGISKQIRLLEDELGVEVFARSGKHLTRV
TPAGERIIHTAGEILRKVESIKQIAQEFS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5z4y-a1-m1-cB 89 89 1.0000 1.0000 1.0000 1.27e-61 5z4y-a1-m1-cA_5z4y-a1-m1-cB
2 5z4y-a1-m1-cA 89 89 1.0000 1.0000 1.0000 1.27e-61 5z4y-a1-m1-cA_5z4y-a1-m1-cB
3 4x6g-a2-m1-cH 292 85 0.3820 0.1164 0.4000 1.08e-11 4x6g-a2-m1-cH_4x6g-a2-m1-cE
4 4x6g-a2-m1-cE 307 85 0.3483 0.1010 0.3647 2.14e-09 4x6g-a2-m1-cH_4x6g-a2-m1-cE
5 4ihs-a3-m1-cA 89 80 0.2921 0.2921 0.3250 3.83e-07 4ihs-a3-m1-cA_4ihs-a3-m1-cC
6 4ihs-a3-m1-cC 90 80 0.2921 0.2889 0.3250 4.50e-07 4ihs-a3-m1-cA_4ihs-a3-m1-cC
7 3k1m-a4-m1-cA 300 80 0.2921 0.0867 0.3250 3.36e-06 3k1m-a4-m1-cA_3k1m-a4-m3-cB
8 3k1m-a2-m2-cA 300 80 0.2921 0.0867 0.3250 3.36e-06 3k1m-a2-m1-cA_3k1m-a2-m2-cA
9 3k1m-a2-m1-cA 300 80 0.2921 0.0867 0.3250 3.36e-06 3k1m-a2-m1-cA_3k1m-a2-m2-cA, 3k1m-a2-m1-cA_3k1m-a2-m4-cB
10 3k1m-a1-m1-cA 300 80 0.2921 0.0867 0.3250 3.36e-06 3k1m-a1-m1-cA_3k1m-a1-m1-cB
11 3k1m-a4-m3-cB 305 80 0.2921 0.0852 0.3250 3.50e-06 3k1m-a4-m1-cA_3k1m-a4-m3-cB
12 3k1m-a2-m4-cB 305 80 0.2921 0.0852 0.3250 3.50e-06 3k1m-a2-m1-cA_3k1m-a2-m4-cB
13 3k1m-a1-m1-cB 305 80 0.2921 0.0852 0.3250 3.50e-06 3k1m-a1-m1-cA_3k1m-a1-m1-cB
14 5y2v-a1-m1-cD 302 78 0.2697 0.0795 0.3077 7.35e-06 5y2v-a1-m1-cD_5y2v-a1-m1-cA, 5y2v-a1-m1-cD_5y2v-a1-m1-cB
15 5y2v-a1-m1-cA 304 78 0.2697 0.0789 0.3077 7.58e-06 5y2v-a1-m1-cD_5y2v-a1-m1-cA
16 5y2v-a1-m1-cB 303 78 0.2697 0.0792 0.3077 7.65e-06 5y2v-a1-m1-cD_5y2v-a1-m1-cB
17 7dwo-a1-m2-cB 292 68 0.2809 0.0856 0.3676 9.70e-06 7dwo-a1-m1-cA_7dwo-a1-m2-cB, 7dwo-a1-m2-cA_7dwo-a1-m2-cB
18 7dwo-a1-m2-cA 292 68 0.2809 0.0856 0.3676 9.70e-06 7dwo-a1-m2-cA_7dwo-a1-m2-cB
19 7dwo-a1-m1-cA 292 68 0.2809 0.0856 0.3676 9.70e-06 7dwo-a1-m1-cA_7dwo-a1-m2-cB
20 4pzj-a1-m2-cA 67 46 0.2022 0.2687 0.3913 0.009 4pzj-a1-m1-cA_4pzj-a1-m2-cA
21 4pzj-a1-m1-cA 67 46 0.2022 0.2687 0.3913 0.009 4pzj-a1-m1-cA_4pzj-a1-m2-cA
22 7trv-a2-m1-cD 87 61 0.2472 0.2529 0.3607 0.021 7trv-a2-m1-cC_7trv-a2-m1-cD
23 7trv-a2-m1-cC 87 61 0.2472 0.2529 0.3607 0.022 7trv-a2-m1-cC_7trv-a2-m1-cD
24 3fzj-a3-m2-cJ 296 52 0.2360 0.0709 0.4038 0.026 3fzj-a3-m1-cI_3fzj-a3-m2-cJ
25 3fzj-a3-m1-cI 296 52 0.2360 0.0709 0.4038 0.026 3fzj-a3-m1-cI_3fzj-a3-m2-cJ
26 3fzj-a2-m1-cH 296 52 0.2360 0.0709 0.4038 0.026 3fzj-a2-m1-cE_3fzj-a2-m1-cH
27 3fzj-a2-m1-cE 296 52 0.2360 0.0709 0.4038 0.026 3fzj-a2-m1-cE_3fzj-a2-m1-cH
28 3fxu-a1-m2-cA 296 52 0.2360 0.0709 0.4038 0.026 3fxu-a1-m2-cB_3fxu-a1-m2-cA
29 3fxu-a1-m1-cA 296 52 0.2360 0.0709 0.4038 0.026 3fxu-a1-m2-cB_3fxu-a1-m1-cA
30 5ydw-a1-m1-cA 293 34 0.1798 0.0546 0.4706 0.058 5ydw-a1-m2-cB_5ydw-a1-m1-cA
31 5ydw-a1-m2-cB 289 34 0.1798 0.0554 0.4706 0.059 5ydw-a1-m1-cB_5ydw-a1-m2-cB, 5ydw-a1-m2-cB_5ydw-a1-m1-cA
32 5ydw-a1-m1-cB 289 34 0.1798 0.0554 0.4706 0.059 5ydw-a1-m1-cB_5ydw-a1-m2-cB
33 2vq5-a1-m2-cA 169 37 0.1461 0.0769 0.3514 0.18 2vq5-a1-m1-cA_2vq5-a1-m2-cA, 2vq5-a1-m2-cB_2vq5-a1-m2-cA
34 2vq5-a1-m1-cA 169 37 0.1461 0.0769 0.3514 0.18 2vq5-a1-m1-cA_2vq5-a1-m2-cA
35 2fon-a2-m2-cC 653 41 0.1124 0.0153 0.2439 0.64 2fon-a2-m1-cC_2fon-a2-m2-cC
36 2fon-a2-m1-cC 653 41 0.1124 0.0153 0.2439 0.64 2fon-a2-m1-cC_2fon-a2-m2-cC
37 2vq5-a1-m2-cB 151 32 0.1461 0.0861 0.4062 0.97 2vq5-a1-m2-cB_2vq5-a1-m2-cA
38 3hhg-a1-m1-cB 295 58 0.1798 0.0542 0.2759 2.2 3hhg-a1-m1-cC_3hhg-a1-m1-cB
39 3hhg-a1-m1-cC 294 60 0.1798 0.0544 0.2667 2.2 3hhg-a1-m1-cC_3hhg-a1-m1-cB
40 6eqo-a1-m1-cB 1803 35 0.1461 0.0072 0.3714 2.2 6eqo-a1-m1-cB_6eqo-a1-m1-cA
41 6eqo-a1-m1-cA 1804 35 0.1461 0.0072 0.3714 2.2 6eqo-a1-m1-cB_6eqo-a1-m1-cA
42 3sl1-a2-m6-cA 308 22 0.1236 0.0357 0.5000 2.3 3sl1-a2-m1-cA_3sl1-a2-m6-cA, 3sl1-a2-m2-cA_3sl1-a2-m6-cA, 3sl1-a2-m5-cA_3sl1-a2-m6-cA
43 3sl1-a2-m5-cA 308 22 0.1236 0.0357 0.5000 2.3 3sl1-a2-m5-cA_3sl1-a2-m6-cA
44 3sl1-a2-m2-cA 308 22 0.1236 0.0357 0.5000 2.3 3sl1-a2-m2-cA_3sl1-a2-m6-cA
45 3sl1-a2-m1-cA 308 22 0.1236 0.0357 0.5000 2.3 3sl1-a2-m1-cA_3sl1-a2-m6-cA
46 2xro-a1-m1-cE 239 75 0.2472 0.0921 0.2933 4.1 2xro-a1-m1-cE_2xro-a1-m1-cF
47 2xro-a1-m1-cA 239 75 0.2472 0.0921 0.2933 4.1 2xro-a1-m1-cA_2xro-a1-m1-cF
48 2xrn-a1-m2-cA 239 75 0.2472 0.0921 0.2933 4.1 2xrn-a1-m2-cA_2xrn-a1-m2-cB
49 2xro-a1-m1-cF 240 75 0.2472 0.0917 0.2933 4.3 2xro-a1-m1-cA_2xro-a1-m1-cF, 2xro-a1-m1-cB_2xro-a1-m1-cF, 2xro-a1-m1-cE_2xro-a1-m1-cF
50 2xro-a1-m1-cB 240 75 0.2472 0.0917 0.2933 4.3 2xro-a1-m1-cB_2xro-a1-m1-cF
51 2xrn-a1-m2-cB 241 75 0.2472 0.0913 0.2933 4.4 2xrn-a1-m1-cB_2xrn-a1-m2-cB, 2xrn-a1-m2-cA_2xrn-a1-m2-cB
52 2xrn-a1-m1-cB 241 75 0.2472 0.0913 0.2933 4.4 2xrn-a1-m1-cB_2xrn-a1-m2-cB
53 4fdx-a1-m3-cB 64 19 0.1124 0.1562 0.5263 7.8 4fdx-a1-m2-cB_4fdx-a1-m3-cB, 4fdx-a1-m3-cA_4fdx-a1-m3-cB
54 4fdx-a1-m2-cB 64 19 0.1124 0.1562 0.5263 7.8 4fdx-a1-m2-cB_4fdx-a1-m3-cB
55 2czc-a1-m1-cD 332 38 0.1461 0.0392 0.3421 7.8 2czc-a1-m1-cD_2czc-a1-m1-cA, 2czc-a1-m1-cD_2czc-a1-m1-cB, 2czc-a1-m1-cD_2czc-a1-m1-cC
56 2czc-a1-m1-cC 333 38 0.1461 0.0390 0.3421 7.8 2czc-a1-m1-cD_2czc-a1-m1-cC
57 2czc-a1-m1-cB 333 38 0.1461 0.0390 0.3421 7.8 2czc-a1-m1-cD_2czc-a1-m1-cB
58 2czc-a1-m1-cA 334 38 0.1461 0.0389 0.3421 7.9 2czc-a1-m1-cD_2czc-a1-m1-cA
59 4fdx-a1-m3-cA 61 19 0.1124 0.1639 0.5263 8.1 4fdx-a1-m3-cA_4fdx-a1-m3-cB
60 3gw6-a1-m1-cB 255 34 0.1573 0.0549 0.4118 8.2 3gw6-a1-m1-cB_3gw6-a1-m1-cA
61 3gw6-a1-m1-cA 256 34 0.1573 0.0547 0.4118 8.3 3gw6-a1-m1-cB_3gw6-a1-m1-cA
62 2o78-a1-m1-cB 514 38 0.1236 0.0214 0.2895 8.5 2o78-a1-m1-cD_2o78-a1-m1-cB
63 2o78-a1-m1-cD 513 38 0.1236 0.0214 0.2895 8.8 2o78-a1-m1-cD_2o78-a1-m1-cB
64 2o6y-a2-m1-cH 513 38 0.1236 0.0214 0.2895 9.2 2o6y-a2-m1-cE_2o6y-a2-m1-cH, 2o6y-a2-m1-cG_2o6y-a2-m1-cH
65 2o6y-a2-m1-cG 513 38 0.1236 0.0214 0.2895 9.2 2o6y-a2-m1-cG_2o6y-a2-m1-cH
66 2o6y-a2-m1-cE 513 38 0.1236 0.0214 0.2895 9.2 2o6y-a2-m1-cE_2o6y-a2-m1-cH

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Reference:
Jacob Schwartz et al.

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