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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
SMKQDQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRLANQPD
DIPCGVLSEDLLFDMIGDHNQLLADILDLAPIMYKHM

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4mer-a1-m1-cD 97 97 1.0000 1.0000 1.0000 4.33e-69 4mer-a1-m1-cA_4mer-a1-m1-cD, 4mer-a1-m1-cC_4mer-a1-m1-cD
2 4mer-a1-m1-cA 96 97 0.9897 1.0000 0.9897 1.45e-66 4mer-a1-m1-cA_4mer-a1-m1-cD
3 4pz1-a1-m2-cA 97 97 0.9485 0.9485 0.9485 1.92e-62 4pz1-a1-m1-cA_4pz1-a1-m2-cA
4 4pz1-a1-m1-cA 97 97 0.9485 0.9485 0.9485 1.92e-62 4pz1-a1-m1-cA_4pz1-a1-m2-cA
5 4mer-a1-m1-cC 88 95 0.9072 1.0000 0.9263 1.96e-59 4mer-a1-m1-cC_4mer-a1-m1-cD
6 3lpx-a1-m1-cB 458 60 0.1649 0.0349 0.2667 6.9 3lpx-a1-m1-cB_3lpx-a1-m1-cA
7 3lpx-a1-m1-cA 462 60 0.1649 0.0346 0.2667 7.0 3lpx-a1-m1-cB_3lpx-a1-m1-cA
8 3r84-a19-m1-cF 74 23 0.1237 0.1622 0.5217 9.8 3r84-a19-m1-cF_3r84-a19-m1-cD, 3r84-a19-m1-cF_3r84-a19-m1-cH

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Reference:
Jacob Schwartz et al.

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