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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
SMLSLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILNVGDIGGNETV
TLRQSFVPVRPGPRQLIASLDSPQLSQVHGVIQVDVA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2xzz-a1-m9-cA 97 97 1.0000 1.0000 1.0000 4.74e-65 2xzz-a1-m10-cA_2xzz-a1-m9-cA, 2xzz-a1-m24-cA_2xzz-a1-m9-cA, 2xzz-a1-m4-cA_2xzz-a1-m9-cA
2 2xzz-a1-m4-cA 97 97 1.0000 1.0000 1.0000 4.74e-65 2xzz-a1-m4-cA_2xzz-a1-m9-cA
3 2xzz-a1-m24-cA 97 97 1.0000 1.0000 1.0000 4.74e-65 2xzz-a1-m24-cA_2xzz-a1-m9-cA
4 2xzz-a1-m10-cA 97 97 1.0000 1.0000 1.0000 4.74e-65 2xzz-a1-m10-cA_2xzz-a1-m9-cA
5 1ex0-a1-m1-cA 705 88 0.3505 0.0482 0.3864 3.70e-11 1ex0-a1-m1-cA_1ex0-a1-m1-cB
6 1ex0-a1-m1-cB 716 88 0.3505 0.0475 0.3864 3.71e-11 1ex0-a1-m1-cA_1ex0-a1-m1-cB
7 1ggt-a1-m1-cB 708 88 0.3505 0.0480 0.3864 4.00e-11 1ggt-a1-m1-cB_1ggt-a1-m1-cA
8 1ggt-a1-m1-cA 710 88 0.3505 0.0479 0.3864 4.00e-11 1ggt-a1-m1-cB_1ggt-a1-m1-cA
9 1l9n-a1-m1-cB 673 96 0.3093 0.0446 0.3125 5.57e-08 1l9n-a1-m1-cA_1l9n-a1-m1-cB
10 1l9n-a1-m1-cA 673 96 0.3093 0.0446 0.3125 5.57e-08 1l9n-a1-m1-cA_1l9n-a1-m1-cB
11 2q3z-a2-m2-cA 655 90 0.2680 0.0397 0.2889 2.07e-07 2q3z-a2-m1-cA_2q3z-a2-m2-cA
12 2q3z-a2-m1-cA 655 90 0.2680 0.0397 0.2889 2.07e-07 2q3z-a2-m1-cA_2q3z-a2-m2-cA
13 1kv3-a3-m1-cE 651 90 0.2680 0.0399 0.2889 2.31e-07 1kv3-a3-m1-cD_1kv3-a3-m1-cE
14 1kv3-a3-m1-cD 651 90 0.2680 0.0399 0.2889 2.31e-07 1kv3-a3-m1-cD_1kv3-a3-m1-cE
15 3lyf-a2-m1-cD 238 32 0.1237 0.0504 0.3750 1.7 3lyf-a2-m1-cD_3lyf-a2-m1-cC
16 3lyf-a2-m1-cC 241 32 0.1237 0.0498 0.3750 1.8 3lyf-a2-m1-cD_3lyf-a2-m1-cC
17 4v9e-a5-m1-cBL 241 32 0.1237 0.0498 0.3750 1.8 4v9e-a5-m1-cBG_4v9e-a5-m1-cBL
18 4v9e-a5-m1-cBG 241 32 0.1237 0.0498 0.3750 1.8 4v9e-a5-m1-cBG_4v9e-a5-m1-cBL
19 4h5p-a2-m3-cD 244 32 0.1237 0.0492 0.3750 1.8 4h5p-a2-m3-cC_4h5p-a2-m3-cD
20 4h5p-a2-m3-cC 244 32 0.1237 0.0492 0.3750 1.8 4h5p-a2-m3-cC_4h5p-a2-m3-cD
21 3ov9-a2-m8-cC 244 32 0.1237 0.0492 0.3750 2.9 3ov9-a2-m4-cC_3ov9-a2-m8-cC
22 3ov9-a2-m4-cC 244 32 0.1237 0.0492 0.3750 2.9 3ov9-a2-m4-cC_3ov9-a2-m8-cC
23 4j4w-a1-m4-cA 243 28 0.1134 0.0453 0.3929 7.5 4j4w-a1-m2-cA_4j4w-a1-m4-cA
24 4j4w-a1-m2-cA 243 28 0.1134 0.0453 0.3929 7.5 4j4w-a1-m2-cA_4j4w-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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