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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=75)
SMLYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALHNRP
VFENHGPVQVMLAKP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6nx5-a2-m1-cD 75 75 1.0000 1.0000 1.0000 2.39e-50 6nx5-a2-m1-cC_6nx5-a2-m1-cD
2 6nx5-a2-m1-cC 74 75 0.9733 0.9865 0.9733 1.54e-46 6nx5-a2-m1-cC_6nx5-a2-m1-cD
3 6ff7-a1-m1-cz 101 59 0.2400 0.1782 0.3051 0.011 6ff7-a1-m1-cN_6ff7-a1-m1-cz
4 6ff7-a1-m1-cN 101 59 0.2400 0.1782 0.3051 0.011 6ff7-a1-m1-cN_6ff7-a1-m1-cz
5 5ifm-a1-m1-cA 254 61 0.2133 0.0630 0.2623 0.012 5ifm-a1-m1-cA_5ifm-a1-m1-cB
6 5ifm-a1-m1-cB 259 61 0.2133 0.0618 0.2623 0.012 5ifm-a1-m1-cA_5ifm-a1-m1-cB
7 7sp0-a1-m1-cB 244 59 0.2000 0.0615 0.2542 0.067 7sp0-a1-m1-cB_7sp0-a1-m1-cA
8 7sp0-a1-m1-cA 253 59 0.2000 0.0593 0.2542 0.067 7sp0-a1-m1-cB_7sp0-a1-m1-cA
9 5t9p-a6-m1-cD 91 64 0.1600 0.1319 0.1875 0.10 5t9p-a6-m1-cD_5t9p-a6-m1-cC
10 5t9p-a6-m1-cC 106 64 0.1600 0.1132 0.1875 0.11 5t9p-a6-m1-cD_5t9p-a6-m1-cC
11 5ca5-a1-m1-cB 248 64 0.2400 0.0726 0.2812 0.21 5ca5-a1-m1-cA_5ca5-a1-m1-cB
12 5ca5-a1-m1-cA 248 64 0.2400 0.0726 0.2812 0.21 5ca5-a1-m1-cA_5ca5-a1-m1-cB
13 3ctr-a2-m4-cA 75 36 0.1867 0.1867 0.3889 0.23 3ctr-a2-m1-cA_3ctr-a2-m4-cA, 3ctr-a2-m2-cA_3ctr-a2-m4-cA, 3ctr-a2-m3-cA_3ctr-a2-m4-cA
14 3ctr-a2-m3-cA 75 36 0.1867 0.1867 0.3889 0.23 3ctr-a2-m3-cA_3ctr-a2-m4-cA
15 3ctr-a2-m2-cA 75 36 0.1867 0.1867 0.3889 0.23 3ctr-a2-m2-cA_3ctr-a2-m4-cA
16 3ctr-a2-m1-cA 75 36 0.1867 0.1867 0.3889 0.23 3ctr-a2-m1-cA_3ctr-a2-m4-cA
17 3ulh-a1-m2-cA 82 26 0.1600 0.1463 0.4615 0.34 3ulh-a1-m1-cA_3ulh-a1-m2-cA
18 3ulh-a1-m1-cA 82 26 0.1600 0.1463 0.4615 0.34 3ulh-a1-m1-cA_3ulh-a1-m2-cA
19 5ifn-a1-m1-cB 252 72 0.2533 0.0754 0.2639 0.37 5ifn-a1-m1-cB_5ifn-a1-m1-cA
20 5ifn-a1-m1-cA 257 72 0.2533 0.0739 0.2639 0.37 5ifn-a1-m1-cB_5ifn-a1-m1-cA
21 4ft2-a1-m1-cB 670 27 0.1467 0.0164 0.4074 4.5 4ft2-a1-m1-cB_4ft2-a1-m1-cA
22 6g6s-a1-m1-cB 91 60 0.1733 0.1429 0.2167 4.6 6g6s-a1-m1-cB_6g6s-a1-m1-cA
23 4ft2-a1-m1-cA 674 27 0.1467 0.0163 0.4074 4.6 4ft2-a1-m1-cB_4ft2-a1-m1-cA
24 6g6s-a1-m1-cA 95 60 0.1733 0.1368 0.2167 4.9 6g6s-a1-m1-cB_6g6s-a1-m1-cA
25 2jwn-a1-m1-cB 124 31 0.1333 0.0806 0.3226 5.0 2jwn-a1-m1-cA_2jwn-a1-m1-cB
26 2jwn-a1-m1-cA 124 31 0.1333 0.0806 0.3226 5.0 2jwn-a1-m1-cA_2jwn-a1-m1-cB
27 1qap-a1-m1-cB 289 20 0.1467 0.0381 0.5500 7.6 1qap-a1-m1-cA_1qap-a1-m1-cB
28 1qap-a1-m1-cA 289 20 0.1467 0.0381 0.5500 7.6 1qap-a1-m1-cA_1qap-a1-m1-cB
29 3val-a1-m1-cI 172 21 0.1200 0.0523 0.4286 9.6 3val-a1-m1-cI_3val-a1-m1-cA
30 2g4b-a1-m2-cA 172 21 0.1200 0.0523 0.4286 9.6 2g4b-a1-m1-cA_2g4b-a1-m2-cA
31 2g4b-a1-m1-cA 172 21 0.1200 0.0523 0.4286 9.6 2g4b-a1-m1-cA_2g4b-a1-m2-cA
32 3val-a1-m1-cA 174 21 0.1200 0.0517 0.4286 9.9 3val-a1-m1-cI_3val-a1-m1-cA
33 3vai-a1-m1-cB 174 21 0.1200 0.0517 0.4286 9.9 3vai-a1-m1-cA_3vai-a1-m1-cB
34 3vai-a1-m1-cA 174 21 0.1200 0.0517 0.4286 9.9 3vai-a1-m1-cA_3vai-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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