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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWWTDGHTNFFTVWANRQLATNA
SGSLAVGDPVVVQGRLKVRTRTSADIDAVAIGHDLARG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4dam-a2-m1-cG 98 98 1.0000 1.0000 1.0000 2.42e-68 4dam-a2-m1-cG_4dam-a2-m1-cH
2 4dam-a3-m1-cL 100 100 0.9898 0.9700 0.9700 1.79e-65 4dam-a3-m1-cL_4dam-a3-m1-cI
3 4dam-a2-m1-cE 112 111 1.0000 0.8750 0.8829 3.14e-63 4dam-a2-m1-cF_4dam-a2-m1-cE
4 4dam-a2-m1-cH 108 108 0.9898 0.8981 0.8981 9.88e-63 4dam-a2-m1-cG_4dam-a2-m1-cH
5 4dam-a3-m1-cI 110 110 0.9898 0.8818 0.8818 1.78e-62 4dam-a3-m1-cL_4dam-a3-m1-cI
6 4dam-a2-m1-cF 110 110 0.9898 0.8818 0.8818 1.78e-62 4dam-a2-m1-cF_4dam-a2-m1-cE
7 3eiv-a3-m1-cC 111 99 0.3980 0.3514 0.3939 1.15e-13 3eiv-a3-m1-cD_3eiv-a3-m1-cC
8 3eiv-a2-m1-cA 98 93 0.3776 0.3776 0.3978 1.56e-11 3eiv-a2-m1-cA_3eiv-a2-m1-cB
9 3eiv-a1-m1-cA 98 93 0.3776 0.3776 0.3978 1.56e-11 3eiv-a1-m1-cA_3eiv-a1-m1-cD
10 3eiv-a2-m1-cB 111 101 0.3980 0.3514 0.3861 1.98e-10 3eiv-a2-m1-cA_3eiv-a2-m1-cB
11 3eiv-a3-m1-cD 100 93 0.3776 0.3700 0.3978 7.70e-10 3eiv-a3-m1-cD_3eiv-a3-m1-cC
12 3eiv-a1-m1-cD 100 93 0.3776 0.3700 0.3978 7.70e-10 3eiv-a1-m1-cA_3eiv-a1-m1-cD
13 1x3e-a1-m2-cA 110 96 0.3469 0.3091 0.3542 2.64e-08 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
14 1x3e-a1-m1-cA 110 96 0.3469 0.3091 0.3542 2.64e-08 1x3e-a1-m1-cA_1x3e-a1-m2-cA
15 5gqo-a1-m2-cB 98 96 0.3469 0.3469 0.3542 1.85e-07 5gqo-a1-m1-cB_5gqo-a1-m2-cB
16 5gqo-a1-m1-cB 98 96 0.3469 0.3469 0.3542 1.85e-07 5gqo-a1-m1-cB_5gqo-a1-m2-cB
17 1ue7-a1-m2-cA 106 84 0.3061 0.2830 0.3571 2.70e-07 1ue7-a1-m2-cB_1ue7-a1-m2-cA
18 1ue7-a1-m1-cA 106 84 0.3061 0.2830 0.3571 2.70e-07 1ue7-a1-m2-cB_1ue7-a1-m1-cA
19 3a5u-a1-m2-cB 112 97 0.3469 0.3036 0.3505 1.50e-06 3a5u-a1-m2-cB_3a5u-a1-m2-cA
20 3a5u-a1-m2-cA 118 103 0.3469 0.2881 0.3301 4.29e-06 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
21 3a5u-a1-m1-cA 118 103 0.3469 0.2881 0.3301 4.29e-06 3a5u-a1-m1-cA_3a5u-a1-m2-cA
22 7f5z-a1-m2-cB 118 102 0.3469 0.2881 0.3333 4.87e-06 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
23 7f5z-a1-m1-cB 118 102 0.3469 0.2881 0.3333 4.87e-06 7f5z-a1-m1-cB_7f5z-a1-m2-cB
24 1ue1-a1-m2-cB 119 101 0.3469 0.2857 0.3366 5.00e-06 1ue1-a1-m1-cB_1ue1-a1-m2-cB
25 1ue1-a1-m1-cB 119 101 0.3469 0.2857 0.3366 5.00e-06 1ue1-a1-m1-cB_1ue1-a1-m2-cB
26 1x3e-a1-m2-cB 119 104 0.3469 0.2857 0.3269 6.79e-06 1x3e-a1-m2-cA_1x3e-a1-m2-cB
27 7f5y-a1-m2-cB 120 104 0.3469 0.2833 0.3269 1.10e-05 7f5y-a1-m2-cA_7f5y-a1-m2-cB
28 7f5z-a1-m2-cA 117 102 0.3469 0.2906 0.3333 2.93e-05 7f5z-a1-m2-cA_7f5z-a1-m2-cB
29 7f5y-a1-m2-cA 109 97 0.3469 0.3119 0.3505 1.26e-04 7f5y-a1-m2-cA_7f5y-a1-m2-cB
30 3udg-a2-m1-cC 214 82 0.2857 0.1308 0.3415 0.004 3udg-a2-m1-cB_3udg-a2-m1-cC
31 3udg-a2-m1-cB 214 92 0.3163 0.1449 0.3370 0.004 3udg-a2-m1-cB_3udg-a2-m1-cC
32 1sru-a1-m1-cA 100 79 0.2449 0.2400 0.3038 0.019 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
33 1ue7-a2-m3-cD 95 90 0.3061 0.3158 0.3333 0.026 1ue7-a2-m1-cD_1ue7-a2-m3-cD
34 1ue7-a2-m1-cD 95 90 0.3061 0.3158 0.3333 0.026 1ue7-a2-m1-cD_1ue7-a2-m3-cD
35 1ue7-a1-m2-cB 98 90 0.2959 0.2959 0.3222 0.046 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
36 1sru-a1-m1-cD 101 73 0.2245 0.2178 0.3014 0.12 1sru-a1-m1-cA_1sru-a1-m1-cD
37 4mz9-a1-m1-cD 114 79 0.2347 0.2018 0.2911 0.64 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
38 4mz9-a1-m1-cC 114 79 0.2347 0.2018 0.2911 0.64 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
39 4mz9-a1-m1-cB 114 79 0.2347 0.2018 0.2911 0.64 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
40 1z9f-a2-m4-cA 89 69 0.2245 0.2472 0.3188 0.65 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
41 1z9f-a2-m3-cA 89 69 0.2245 0.2472 0.3188 0.65 1z9f-a2-m3-cA_1z9f-a2-m4-cA
42 1z9f-a2-m1-cA 89 69 0.2245 0.2472 0.3188 0.65 1z9f-a2-m1-cA_1z9f-a2-m4-cA

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Reference:
Jacob Schwartz et al.

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