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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
SMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVRKADMSFGTSTDLCCF
VDFYCIGKNPSISAAITGCLTQHFKVKPERVYISFNE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3t5s-a1-m3-cA 97 97 1.0000 1.0000 1.0000 1.34e-69 3t5s-a1-m2-cA_3t5s-a1-m3-cA
2 3t5s-a1-m2-cA 97 97 1.0000 1.0000 1.0000 1.34e-69 3t5s-a1-m2-cA_3t5s-a1-m3-cA
3 2wkb-a2-m1-cA 105 96 0.3196 0.2952 0.3229 9.88e-13 2wkb-a2-m1-cA_2wkb-a2-m1-cC
4 3gac-a2-m1-cE 115 101 0.3402 0.2870 0.3267 3.69e-12 3gac-a2-m1-cD_3gac-a2-m1-cE
5 3gac-a2-m1-cD 115 101 0.3402 0.2870 0.3267 3.69e-12 3gac-a2-m1-cD_3gac-a2-m1-cE
6 2wkb-a2-m1-cC 114 101 0.3299 0.2807 0.3168 4.34e-11 2wkb-a2-m1-cA_2wkb-a2-m1-cC
7 4dh4-a1-m3-cA 114 90 0.3196 0.2719 0.3444 1.85e-10 4dh4-a1-m2-cA_4dh4-a1-m3-cA
8 4dh4-a1-m2-cA 114 90 0.3196 0.2719 0.3444 1.85e-10 4dh4-a1-m2-cA_4dh4-a1-m3-cA
9 4p7s-a2-m2-cA 104 96 0.2680 0.2500 0.2708 7.76e-09 4p7s-a2-m1-cA_4p7s-a2-m2-cA
10 4p7s-a2-m1-cA 104 96 0.2680 0.2500 0.2708 7.76e-09 4p7s-a2-m1-cA_4p7s-a2-m2-cA
11 6cuq-a1-m1-cC 115 100 0.2887 0.2435 0.2800 1.29e-08 6cuq-a1-m1-cC_6cuq-a1-m1-cB
12 6cuq-a1-m1-cB 117 100 0.2887 0.2393 0.2800 1.46e-08 6cuq-a1-m1-cC_6cuq-a1-m1-cB
13 1uiz-a2-m3-cD 115 101 0.3608 0.3043 0.3465 1.67e-07 1uiz-a2-m2-cD_1uiz-a2-m3-cD
14 1uiz-a2-m2-cD 115 101 0.3608 0.3043 0.3465 1.67e-07 1uiz-a2-m2-cD_1uiz-a2-m3-cD
15 3g8h-a1-m2-cA 122 56 0.2165 0.1721 0.3750 3.1 3g8h-a1-m1-cA_3g8h-a1-m2-cA
16 3g8h-a1-m1-cA 122 56 0.2165 0.1721 0.3750 3.1 3g8h-a1-m1-cA_3g8h-a1-m2-cA
17 3jr8-a1-m2-cA 122 52 0.2062 0.1639 0.3846 4.4 3jr8-a1-m1-cA_3jr8-a1-m2-cA
18 3jr8-a1-m1-cA 122 52 0.2062 0.1639 0.3846 4.4 3jr8-a1-m1-cA_3jr8-a1-m2-cA
19 1gmz-a2-m3-cB 120 52 0.2062 0.1667 0.3846 8.0 1gmz-a2-m1-cB_1gmz-a2-m3-cB
20 1gmz-a2-m1-cB 120 52 0.2062 0.1667 0.3846 8.0 1gmz-a2-m1-cB_1gmz-a2-m3-cB
21 2ph4-a2-m2-cB 121 63 0.2165 0.1736 0.3333 9.7 2ph4-a2-m1-cA_2ph4-a2-m2-cB, 2ph4-a2-m2-cA_2ph4-a2-m2-cB
22 2ph4-a2-m2-cA 121 63 0.2165 0.1736 0.3333 9.7 2ph4-a2-m2-cA_2ph4-a2-m2-cB
23 2ph4-a2-m1-cA 121 63 0.2165 0.1736 0.3333 9.7 2ph4-a2-m1-cA_2ph4-a2-m2-cB
24 6bja-a1-m4-cA 381 49 0.1753 0.0446 0.3469 9.9 6bja-a1-m1-cA_6bja-a1-m4-cA, 6bja-a1-m2-cA_6bja-a1-m4-cA, 6bja-a1-m3-cA_6bja-a1-m4-cA
25 6bja-a1-m3-cA 381 49 0.1753 0.0446 0.3469 9.9 6bja-a1-m3-cA_6bja-a1-m4-cA
26 6bja-a1-m2-cA 381 49 0.1753 0.0446 0.3469 9.9 6bja-a1-m2-cA_6bja-a1-m4-cA
27 6bja-a1-m1-cA 381 49 0.1753 0.0446 0.3469 9.9 6bja-a1-m1-cA_6bja-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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