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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
SMRYTVSNLSMQTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRC
WESGDDPWVQHAKWFPRCEYLIRIKGQEFIRQVQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2uvl-a1-m1-cB 95 94 1.0000 0.9895 1.0000 2.07e-69 2uvl-a1-m1-cA_2uvl-a1-m1-cB
2 2uvl-a1-m1-cA 94 94 1.0000 1.0000 1.0000 2.56e-69 2uvl-a1-m1-cA_2uvl-a1-m1-cB
3 3mup-a1-m1-cC 103 90 0.7766 0.7087 0.8111 1.55e-55 3mup-a1-m1-cD_3mup-a1-m1-cC
4 3mup-a1-m1-cD 102 90 0.7766 0.7157 0.8111 1.64e-55 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
5 3mup-a1-m1-cB 100 89 0.7766 0.7300 0.8202 3.75e-55 3mup-a1-m1-cB_3mup-a1-m1-cD
6 1oxn-a6-m1-cB 101 84 0.4468 0.4158 0.5000 1.88e-31 1oxn-a6-m1-cD_1oxn-a6-m1-cB
7 1oxn-a7-m1-cA 99 85 0.4468 0.4242 0.4941 2.09e-31 1oxn-a7-m1-cA_1oxn-a7-m1-cD
8 1oxq-a9-m1-cD 100 85 0.4468 0.4200 0.4941 2.28e-31 1oxq-a9-m2-cE_1oxq-a9-m1-cD
9 1oxn-a7-m1-cD 100 85 0.4468 0.4200 0.4941 2.28e-31 1oxn-a7-m1-cA_1oxn-a7-m1-cD
10 1oxn-a6-m1-cD 100 85 0.4468 0.4200 0.4941 2.28e-31 1oxn-a6-m1-cD_1oxn-a6-m1-cB
11 1oxq-a9-m2-cE 94 85 0.4468 0.4468 0.4941 2.52e-31 1oxq-a9-m2-cE_1oxq-a9-m1-cD
12 2i3h-a7-m1-cB 95 85 0.4468 0.4421 0.4941 2.96e-31 2i3h-a7-m2-cA_2i3h-a7-m1-cB
13 2i3h-a6-m2-cB 95 85 0.4468 0.4421 0.4941 2.96e-31 2i3h-a6-m2-cA_2i3h-a6-m2-cB
14 2i3h-a7-m2-cA 90 85 0.4468 0.4667 0.4941 4.02e-31 2i3h-a7-m2-cA_2i3h-a7-m1-cB
15 2i3h-a6-m2-cA 90 85 0.4468 0.4667 0.4941 4.02e-31 2i3h-a6-m2-cA_2i3h-a6-m2-cB
16 4hy0-a3-m1-cE 96 87 0.5000 0.4896 0.5402 5.94e-28 4hy0-a3-m1-cE_4hy0-a3-m1-cD
17 3cm2-a5-m1-cG 102 87 0.5000 0.4608 0.5402 7.59e-28 3cm2-a5-m1-cE_3cm2-a5-m1-cG
18 3cm2-a5-m1-cE 102 87 0.5000 0.4608 0.5402 7.59e-28 3cm2-a5-m1-cE_3cm2-a5-m1-cG
19 4hy0-a3-m1-cD 98 87 0.5000 0.4796 0.5402 8.63e-28 4hy0-a3-m1-cE_4hy0-a3-m1-cD
20 5oqw-a1-m1-cB 107 87 0.5000 0.4393 0.5402 1.03e-27 5oqw-a1-m1-cA_5oqw-a1-m1-cB
21 5oqw-a1-m1-cA 106 87 0.5000 0.4434 0.5402 1.08e-27 5oqw-a1-m1-cA_5oqw-a1-m1-cB
22 2opy-a1-m2-cA 106 87 0.5000 0.4434 0.5402 1.08e-27 2opy-a1-m1-cA_2opy-a1-m2-cA
23 2opy-a1-m1-cA 106 87 0.5000 0.4434 0.5402 1.08e-27 2opy-a1-m1-cA_2opy-a1-m2-cA
24 4ec4-a5-m1-cE 108 87 0.5000 0.4352 0.5402 1.21e-27 4ec4-a5-m1-cL_4ec4-a5-m1-cE
25 4ec4-a5-m1-cL 107 87 0.5000 0.4393 0.5402 1.27e-27 4ec4-a5-m1-cL_4ec4-a5-m1-cE
26 1xb0-a1-m1-cF 103 87 0.4787 0.4369 0.5172 1.98e-27 1xb0-a1-m1-cE_1xb0-a1-m1-cF
27 1xb1-a2-m1-cB 102 87 0.4787 0.4412 0.5172 2.22e-27 1xb1-a2-m2-cF_1xb1-a2-m1-cB
28 1xb0-a1-m1-cE 93 87 0.4787 0.4839 0.5172 2.70e-27 1xb0-a1-m1-cE_1xb0-a1-m1-cF
29 1xb1-a2-m2-cF 89 87 0.4787 0.5056 0.5172 2.97e-27 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
30 1xb1-a2-m1-cA 90 87 0.4787 0.5000 0.5172 3.05e-27 1xb1-a2-m2-cF_1xb1-a2-m1-cA
31 4j3y-a1-m1-cA 83 75 0.3617 0.4096 0.4533 2.42e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 73 0.3511 0.4286 0.4521 8.84e-21 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 6gjw-a2-m1-cC 78 65 0.2872 0.3462 0.4154 3.68e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
34 6gjw-a2-m1-cB 78 65 0.2872 0.3462 0.4154 3.68e-13 6gjw-a2-m1-cB_6gjw-a2-m1-cC
35 2poi-a1-m2-cA 78 65 0.2872 0.3462 0.4154 3.68e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
36 2poi-a1-m1-cA 78 65 0.2872 0.3462 0.4154 3.68e-13 2poi-a1-m1-cA_2poi-a1-m2-cA
37 8atu-a1-m1-cB 2837 82 0.3191 0.0106 0.3659 4.99e-12 8atu-a1-m1-cA_8atu-a1-m1-cB
38 8atu-a1-m1-cA 2837 82 0.3191 0.0106 0.3659 4.99e-12 8atu-a1-m1-cA_8atu-a1-m1-cB
39 1m4m-a3-m3-cA 112 77 0.2979 0.2500 0.3636 2.90e-08 1m4m-a3-m1-cA_1m4m-a3-m3-cA
40 1m4m-a3-m1-cA 112 77 0.2979 0.2500 0.3636 2.90e-08 1m4m-a3-m1-cA_1m4m-a3-m3-cA
41 1m4m-a2-m2-cA 112 77 0.2979 0.2500 0.3636 2.90e-08 1m4m-a2-m1-cA_1m4m-a2-m2-cA
42 1m4m-a2-m1-cA 112 77 0.2979 0.2500 0.3636 2.90e-08 1m4m-a2-m1-cA_1m4m-a2-m2-cA
43 3uef-a1-m1-cC 137 70 0.2766 0.1898 0.3714 2.20e-07 3uef-a1-m1-cA_3uef-a1-m1-cC
44 3uef-a1-m1-cA 136 70 0.2766 0.1912 0.3714 2.22e-07 3uef-a1-m1-cA_3uef-a1-m1-cC
45 4ilk-a1-m1-cB 337 55 0.1596 0.0445 0.2727 1.1 4ilk-a1-m1-cA_4ilk-a1-m1-cB
46 4ilk-a1-m1-cA 337 55 0.1596 0.0445 0.2727 1.1 4ilk-a1-m1-cA_4ilk-a1-m1-cB
47 8hao-a1-m1-cC 235 20 0.1170 0.0468 0.5500 2.3 8hao-a1-m1-cA_8hao-a1-m1-cC
48 8hao-a1-m1-cA 235 20 0.1170 0.0468 0.5500 2.3 8hao-a1-m1-cA_8hao-a1-m1-cC
49 1cul-a2-m2-cC 328 20 0.1170 0.0335 0.5500 2.7 1cul-a2-m1-cC_1cul-a2-m2-cC
50 1cul-a2-m1-cC 328 20 0.1170 0.0335 0.5500 2.7 1cul-a2-m1-cC_1cul-a2-m2-cC
51 1azt-a1-m1-cB 340 20 0.1170 0.0324 0.5500 2.7 1azt-a1-m1-cA_1azt-a1-m1-cB
52 1azt-a1-m1-cA 335 20 0.1170 0.0328 0.5500 2.8 1azt-a1-m1-cA_1azt-a1-m1-cB
53 1r8d-a1-m1-cA 109 46 0.1170 0.1009 0.2391 3.9 1r8d-a1-m1-cB_1r8d-a1-m1-cA
54 1r8d-a1-m1-cB 107 46 0.1170 0.1028 0.2391 4.4 1r8d-a1-m1-cB_1r8d-a1-m1-cA
55 2i00-a4-m1-cE 396 41 0.1170 0.0278 0.2683 6.6 2i00-a4-m1-cE_2i00-a4-m1-cF
56 2i00-a4-m1-cF 398 41 0.1170 0.0276 0.2683 6.6 2i00-a4-m1-cC_2i00-a4-m1-cF, 2i00-a4-m1-cE_2i00-a4-m1-cF
57 2i00-a4-m1-cC 398 41 0.1170 0.0276 0.2683 6.6 2i00-a4-m1-cC_2i00-a4-m1-cF
58 2vmc-a1-m3-cA 252 73 0.2553 0.0952 0.3288 9.2 2vmc-a1-m2-cA_2vmc-a1-m3-cA
59 2vmc-a1-m2-cA 252 73 0.2553 0.0952 0.3288 9.2 2vmc-a1-m2-cA_2vmc-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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