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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
SNNENAFYARATELIKLANQQNQNTEIQTGEVSASFMWALARYNAWFGSTSFETKEQMQA
KKQEMMDYYMDRYKEMLDANMEDYIENFDHYRATQK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2lyy-a1-m1-cB 96 96 1.0000 1.0000 1.0000 1.17e-67 2lyy-a1-m1-cA_2lyy-a1-m1-cB
2 2lyy-a1-m1-cA 96 96 1.0000 1.0000 1.0000 1.17e-67 2lyy-a1-m1-cA_2lyy-a1-m1-cB
3 3ois-a5-m2-cD 268 34 0.0833 0.0299 0.2353 1.5 3ois-a5-m1-cA_3ois-a5-m2-cD, 3ois-a5-m2-cC_3ois-a5-m2-cD
4 3ois-a5-m1-cA 268 34 0.0833 0.0299 0.2353 1.5 3ois-a5-m1-cA_3ois-a5-m2-cD
5 3ois-a5-m2-cC 267 34 0.0833 0.0300 0.2353 1.5 3ois-a5-m2-cC_3ois-a5-m2-cD
6 4fmf-a1-m1-cB 299 40 0.1562 0.0502 0.3750 2.5 4fmf-a1-m1-cB_4fmf-a1-m1-cA
7 4fmf-a1-m1-cA 302 40 0.1562 0.0497 0.3750 2.5 4fmf-a1-m1-cB_4fmf-a1-m1-cA
8 1ybf-a2-m2-cB 221 32 0.1250 0.0543 0.3750 7.0 1ybf-a2-m2-cB_1ybf-a2-m2-cA
9 1ybf-a2-m2-cA 232 32 0.1250 0.0517 0.3750 7.7 1ybf-a2-m1-cA_1ybf-a2-m2-cA, 1ybf-a2-m2-cB_1ybf-a2-m2-cA
10 1ybf-a2-m1-cA 232 32 0.1250 0.0517 0.3750 7.7 1ybf-a2-m1-cA_1ybf-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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