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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
SPSFNTLTFSNDCDAELRIWSVQEGLSWIPFFGPGIEGLYTAGLIKNQNNLVCRLRRLAN
QTAKSLELLLRVTTEERTFSLINRHAIDFLLTRW

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5uqy-a2-m1-cF 94 94 1.0000 1.0000 1.0000 9.98e-66 5uqy-a2-m1-cN_5uqy-a2-m1-cF
2 5uqy-a2-m1-cN 92 94 0.9681 0.9891 0.9681 2.46e-59 5uqy-a2-m1-cN_5uqy-a2-m1-cF
3 5uqy-a1-m3-cB 127 105 1.0000 0.7402 0.8952 1.29e-58 5uqy-a1-m2-cB_5uqy-a1-m3-cB
4 5uqy-a1-m2-cB 127 105 1.0000 0.7402 0.8952 1.29e-58 5uqy-a1-m2-cB_5uqy-a1-m3-cB
5 3s88-a5-m9-cJ 106 87 0.5319 0.4717 0.5747 6.61e-33 3s88-a5-m5-cJ_3s88-a5-m9-cJ
6 3s88-a5-m5-cJ 106 87 0.5319 0.4717 0.5747 6.61e-33 3s88-a5-m5-cJ_3s88-a5-m9-cJ
7 4g2k-a1-m1-cB 108 45 0.4681 0.4074 0.9778 2.98e-24 4g2k-a1-m1-cC_4g2k-a1-m1-cB
8 4g2k-a1-m1-cC 107 45 0.4681 0.4112 0.9778 3.03e-24 4g2k-a1-m1-cC_4g2k-a1-m1-cB
9 4r0r-a1-m3-cA 48 21 0.1383 0.2708 0.6190 0.083 4r0r-a1-m2-cA_4r0r-a1-m3-cA
10 4r0r-a1-m2-cA 48 21 0.1383 0.2708 0.6190 0.083 4r0r-a1-m2-cA_4r0r-a1-m3-cA
11 3sr2-a1-m1-cC 218 31 0.1383 0.0596 0.4194 1.3 3sr2-a1-m1-cG_3sr2-a1-m1-cC
12 7nfc-a1-m1-cR 218 31 0.1383 0.0596 0.4194 1.3 7nfc-a1-m1-cQ_7nfc-a1-m1-cR
13 7nfc-a1-m1-cQ 211 31 0.1383 0.0616 0.4194 1.3 7nfc-a1-m1-cQ_7nfc-a1-m1-cR
14 7lnt-a1-m1-cA 238 51 0.1702 0.0672 0.3137 1.3 7lnt-a1-m1-cA_7lnt-a1-m1-cB
15 2iny-a1-m3-cA 941 39 0.1277 0.0128 0.3077 2.2 2iny-a1-m2-cA_2iny-a1-m3-cA
16 2iny-a1-m2-cA 941 39 0.1277 0.0128 0.3077 2.2 2iny-a1-m2-cA_2iny-a1-m3-cA
17 3q4f-a2-m1-cF 227 25 0.1277 0.0529 0.4800 3.9 3q4f-a2-m1-cE_3q4f-a2-m1-cF
18 3q4f-a2-m1-cE 227 25 0.1277 0.0529 0.4800 3.9 3q4f-a2-m1-cE_3q4f-a2-m1-cF
19 3sr2-a1-m1-cG 217 25 0.1277 0.0553 0.4800 3.9 3sr2-a1-m1-cG_3sr2-a1-m1-cC
20 6m8s-a1-m1-cK 332 27 0.1170 0.0331 0.4074 5.3 6m8s-a1-m1-cK_6m8s-a1-m1-cG
21 6m8s-a1-m1-cG 334 27 0.1170 0.0329 0.4074 5.3 6m8s-a1-m1-cK_6m8s-a1-m1-cG
22 1tbg-a1-m1-cD 340 27 0.1170 0.0324 0.4074 5.5 1tbg-a1-m1-cB_1tbg-a1-m1-cD, 1tbg-a1-m1-cC_1tbg-a1-m1-cD
23 1tbg-a1-m1-cC 340 27 0.1170 0.0324 0.4074 5.5 1tbg-a1-m1-cC_1tbg-a1-m1-cD
24 1tbg-a1-m1-cB 340 27 0.1170 0.0324 0.4074 5.5 1tbg-a1-m1-cB_1tbg-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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