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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=68)
SPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVRE
YINSLEMS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1hrj-a1-m1-cB 68 68 1.0000 1.0000 1.0000 5.16e-47 1hrj-a1-m1-cA_1hrj-a1-m1-cB
2 1hrj-a1-m1-cA 68 68 1.0000 1.0000 1.0000 5.16e-47 1hrj-a1-m1-cA_1hrj-a1-m1-cB
3 2l9h-a1-m1-cC 67 67 0.9853 1.0000 1.0000 2.34e-46 2l9h-a1-m1-cA_2l9h-a1-m1-cC
4 2l9h-a1-m1-cA 67 67 0.9853 1.0000 1.0000 2.34e-46 2l9h-a1-m1-cA_2l9h-a1-m1-cC
5 5l2u-a2-m2-cI 65 65 0.9559 1.0000 1.0000 9.79e-45 5l2u-a2-m2-cG_5l2u-a2-m2-cI
6 5dnf-a1-m1-cG 65 65 0.9559 1.0000 1.0000 9.79e-45 5dnf-a1-m1-cE_5dnf-a1-m1-cG
7 5dnf-a1-m1-cE 65 65 0.9559 1.0000 1.0000 9.79e-45 5dnf-a1-m1-cE_5dnf-a1-m1-cG
8 5dnf-a1-m1-cD 65 65 0.9559 1.0000 1.0000 9.79e-45 5dnf-a1-m1-cA_5dnf-a1-m1-cD
9 5dnf-a1-m1-cA 65 65 0.9559 1.0000 1.0000 9.79e-45 5dnf-a1-m1-cA_5dnf-a1-m1-cD
10 5l2u-a2-m2-cH 64 64 0.9412 1.0000 1.0000 4.11e-44 5l2u-a2-m2-cG_5l2u-a2-m2-cH
11 5l2u-a2-m2-cG 64 64 0.9412 1.0000 1.0000 4.11e-44 5l2u-a2-m2-cG_5l2u-a2-m2-cH, 5l2u-a2-m2-cG_5l2u-a2-m2-cI
12 6aez-a1-m3-cA 64 64 0.9265 0.9844 0.9844 2.33e-43 6aez-a1-m2-cA_6aez-a1-m3-cA
13 6aez-a1-m2-cA 64 64 0.9265 0.9844 0.9844 2.33e-43 6aez-a1-m2-cA_6aez-a1-m3-cA
14 2vxw-a1-m1-cB 69 68 0.9265 0.9130 0.9265 3.19e-43 2vxw-a1-m1-cD_2vxw-a1-m1-cB
15 2vxw-a1-m1-cA 69 68 0.9265 0.9130 0.9265 3.19e-43 2vxw-a1-m1-cD_2vxw-a1-m1-cA
16 6log-a1-m2-cA 63 63 0.8971 0.9683 0.9683 2.26e-41 6log-a1-m1-cA_6log-a1-m2-cA
17 6log-a1-m1-cA 63 63 0.8971 0.9683 0.9683 2.26e-41 6log-a1-m1-cA_6log-a1-m2-cA
18 2vxw-a1-m1-cD 62 62 0.8676 0.9516 0.9516 1.49e-40 2vxw-a1-m1-cD_2vxw-a1-m1-cA, 2vxw-a1-m1-cD_2vxw-a1-m1-cB
19 5yam-a1-m1-cB 69 68 0.8382 0.8261 0.8382 1.42e-39 5yam-a1-m1-cA_5yam-a1-m1-cB
20 5yam-a1-m1-cA 69 68 0.8382 0.8261 0.8382 1.42e-39 5yam-a1-m1-cA_5yam-a1-m1-cB
21 2q8r-a2-m1-cG 63 56 0.3529 0.3810 0.4286 2.10e-16 2q8r-a2-m1-cF_2q8r-a2-m1-cG
22 2q8r-a2-m1-cF 63 56 0.3529 0.3810 0.4286 2.10e-16 2q8r-a2-m1-cF_2q8r-a2-m1-cG
23 4mhe-a2-m1-cB 69 59 0.3529 0.3478 0.4068 1.66e-15 4mhe-a2-m1-cC_4mhe-a2-m1-cB
24 4mhe-a2-m1-cC 61 58 0.3529 0.3934 0.4138 1.87e-15 4mhe-a2-m1-cC_4mhe-a2-m1-cB
25 2fj2-a2-m1-cC 68 59 0.3529 0.3529 0.4068 3.84e-15 2fj2-a2-m1-cD_2fj2-a2-m1-cC
26 2fj2-a2-m1-cD 67 59 0.3529 0.3582 0.4068 4.14e-15 2fj2-a2-m1-cD_2fj2-a2-m1-cC
27 2ra4-a4-m4-cB 65 58 0.2794 0.2923 0.3276 1.57e-11 2ra4-a4-m2-cB_2ra4-a4-m4-cB
28 2ra4-a4-m2-cB 65 58 0.2794 0.2923 0.3276 1.57e-11 2ra4-a4-m2-cB_2ra4-a4-m4-cB
29 2ra4-a2-m4-cB 65 58 0.2794 0.2923 0.3276 1.57e-11 2ra4-a2-m4-cA_2ra4-a2-m4-cB
30 2ra4-a2-m4-cA 65 58 0.2794 0.2923 0.3276 1.57e-11 2ra4-a2-m4-cA_2ra4-a2-m4-cB
31 5ltl-a1-m1-cB 68 53 0.3529 0.3529 0.4528 1.65e-11 5ltl-a1-m1-cA_5ltl-a1-m1-cB
32 5ltl-a1-m1-cA 67 55 0.3529 0.3582 0.4364 1.74e-11 5ltl-a1-m1-cA_5ltl-a1-m1-cB
33 1ncv-a1-m1-cB 76 61 0.2941 0.2632 0.3279 5.20e-11 1ncv-a1-m1-cA_1ncv-a1-m1-cB
34 1ncv-a1-m1-cA 76 61 0.2941 0.2632 0.3279 5.20e-11 1ncv-a1-m1-cA_1ncv-a1-m1-cB
35 1nr4-a5-m3-cE 69 62 0.3529 0.3478 0.3871 4.47e-10 1nr4-a5-m1-cA_1nr4-a5-m3-cE, 1nr4-a5-m3-cF_1nr4-a5-m3-cE, 1nr4-a5-m4-cG_1nr4-a5-m3-cE
36 1nr4-a5-m3-cF 66 62 0.3529 0.3636 0.3871 4.81e-10 1nr4-a5-m3-cF_1nr4-a5-m3-cE
37 7s5a-a1-m1-cA 73 58 0.3088 0.2877 0.3621 8.47e-10 7s5a-a1-m1-cA_7s5a-a1-m1-cB
38 7s5a-a1-m1-cB 76 58 0.3088 0.2763 0.3621 8.87e-10 7s5a-a1-m1-cA_7s5a-a1-m1-cB
39 1esr-a1-m2-cA 75 58 0.3088 0.2800 0.3621 9.78e-10 1esr-a1-m1-cA_1esr-a1-m2-cA
40 1esr-a1-m1-cA 75 58 0.3088 0.2800 0.3621 9.78e-10 1esr-a1-m1-cA_1esr-a1-m2-cA
41 1nr4-a5-m4-cG 66 57 0.2941 0.3030 0.3509 4.67e-09 1nr4-a5-m4-cG_1nr4-a5-m3-cE
42 1nr4-a5-m1-cA 67 57 0.2941 0.2985 0.3509 5.50e-09 1nr4-a5-m1-cA_1nr4-a5-m3-cE
43 2jp1-a1-m1-cB 60 52 0.2941 0.3333 0.3846 1.27e-08 2jp1-a1-m1-cA_2jp1-a1-m1-cB
44 2jp1-a1-m1-cA 60 52 0.2941 0.3333 0.3846 1.27e-08 2jp1-a1-m1-cA_2jp1-a1-m1-cB
45 2n54-a1-m1-cB 66 56 0.2794 0.2879 0.3393 2.77e-08 2n54-a1-m1-cA_2n54-a1-m1-cB
46 2n54-a1-m1-cA 66 56 0.2794 0.2879 0.3393 2.77e-08 2n54-a1-m1-cA_2n54-a1-m1-cB
47 5eki-a7-m1-cA 72 61 0.3088 0.2917 0.3443 4.97e-07 5eki-a7-m1-cF_5eki-a7-m1-cA
48 5eki-a7-m1-cF 70 61 0.3088 0.3000 0.3443 5.03e-07 5eki-a7-m1-cF_5eki-a7-m1-cA
49 1f2l-a1-m1-cD 70 48 0.2059 0.2000 0.2917 1.05e-05 1f2l-a1-m1-cA_1f2l-a1-m1-cD, 1f2l-a1-m1-cC_1f2l-a1-m1-cD
50 1f2l-a1-m1-cC 64 48 0.2059 0.2188 0.2917 1.05e-05 1f2l-a1-m1-cC_1f2l-a1-m1-cD
51 1f2l-a1-m1-cA 64 48 0.2059 0.2188 0.2917 1.05e-05 1f2l-a1-m1-cA_1f2l-a1-m1-cD
52 4oij-a1-m1-cB 71 56 0.2500 0.2394 0.3036 2.71e-05 4oij-a1-m1-cA_4oij-a1-m1-cB
53 4oij-a1-m1-cA 71 56 0.2500 0.2394 0.3036 2.71e-05 4oij-a1-m1-cA_4oij-a1-m1-cB
54 2hci-a1-m1-cB 65 58 0.2794 0.2923 0.3276 1.28e-04 2hci-a1-m1-cB_2hci-a1-m1-cA
55 2hci-a1-m1-cA 68 58 0.2794 0.2794 0.3276 1.43e-04 2hci-a1-m1-cB_2hci-a1-m1-cA
56 3hp3-a3-m1-cD 64 45 0.2206 0.2344 0.3333 0.001 3hp3-a3-m1-cD_3hp3-a3-m1-cF
57 3hp3-a3-m1-cF 65 45 0.2206 0.2308 0.3333 0.001 3hp3-a3-m1-cD_3hp3-a3-m1-cF
58 4uai-a1-m1-cB 67 43 0.2206 0.2239 0.3488 0.001 4uai-a1-m1-cB_4uai-a1-m1-cA
59 4uai-a1-m1-cA 68 43 0.2206 0.2206 0.3488 0.001 4uai-a1-m1-cB_4uai-a1-m1-cA
60 6gwi-a1-m1-cA 449 41 0.2059 0.0312 0.3415 0.20 6gwi-a1-m1-cA_6gwi-a1-m1-cB
61 6gwi-a1-m1-cB 450 41 0.2059 0.0311 0.3415 0.20 6gwi-a1-m1-cA_6gwi-a1-m1-cB
62 1qe6-a3-m1-cD 72 57 0.2059 0.1944 0.2456 0.45 1qe6-a3-m2-cB_1qe6-a3-m1-cD
63 1qe6-a3-m2-cA 68 57 0.2059 0.2059 0.2456 0.46 1qe6-a3-m2-cA_1qe6-a3-m2-cB
64 1qe6-a3-m2-cB 71 57 0.2059 0.1972 0.2456 0.50 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
65 2mgs-a1-m1-cB 71 40 0.1324 0.1268 0.2250 1.6 2mgs-a1-m1-cA_2mgs-a1-m1-cB
66 2mgs-a1-m1-cA 71 40 0.1324 0.1268 0.2250 1.6 2mgs-a1-m1-cA_2mgs-a1-m1-cB
67 4nar-a2-m2-cA 411 62 0.3088 0.0511 0.3387 1.9 4nar-a2-m1-cA_4nar-a2-m2-cA
68 4nar-a2-m1-cA 411 62 0.3088 0.0511 0.3387 1.9 4nar-a2-m1-cA_4nar-a2-m2-cA
69 1rod-a1-m1-cB 72 57 0.2059 0.1944 0.2456 6.1 1rod-a1-m1-cA_1rod-a1-m1-cB
70 1rod-a1-m1-cA 72 57 0.2059 0.1944 0.2456 6.1 1rod-a1-m1-cA_1rod-a1-m1-cB
71 3n52-a3-m1-cD 70 32 0.1176 0.1143 0.2500 8.5 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
72 3n52-a3-m1-cB 71 32 0.1176 0.1127 0.2500 9.2 3n52-a3-m1-cD_3n52-a3-m1-cB
73 3n52-a3-m1-cC 67 32 0.1176 0.1194 0.2500 9.2 3n52-a3-m1-cC_3n52-a3-m1-cD

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Reference:
Jacob Schwartz et al.

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