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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
SQQVTSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAETTLEGELDVLLDVVKRAQQ
ACVDAGAEEVITSIKIHYRPSTGVTIDEKVWKYRDEYA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1yqh-a1-m2-cA 101 98 1.0000 0.9703 1.0000 9.97e-67 1yqh-a1-m2-cB_1yqh-a1-m2-cA
2 1yqh-a1-m2-cB 98 98 1.0000 1.0000 1.0000 1.68e-66 1yqh-a1-m1-cB_1yqh-a1-m2-cB, 1yqh-a1-m2-cB_1yqh-a1-m2-cA
3 1yqh-a1-m1-cB 98 98 1.0000 1.0000 1.0000 1.68e-66 1yqh-a1-m1-cB_1yqh-a1-m2-cB
4 1vk8-a1-m1-cD 91 90 0.3469 0.3736 0.3778 9.76e-08 1vk8-a1-m1-cA_1vk8-a1-m1-cD, 1vk8-a1-m1-cB_1vk8-a1-m1-cD, 1vk8-a1-m1-cC_1vk8-a1-m1-cD
5 1vk8-a1-m1-cC 91 90 0.3469 0.3736 0.3778 9.76e-08 1vk8-a1-m1-cC_1vk8-a1-m1-cD
6 1vk8-a1-m1-cB 91 90 0.3469 0.3736 0.3778 9.76e-08 1vk8-a1-m1-cB_1vk8-a1-m1-cD
7 1vk8-a1-m1-cA 91 90 0.3469 0.3736 0.3778 9.76e-08 1vk8-a1-m1-cA_1vk8-a1-m1-cD
8 2eky-a2-m1-cE 98 88 0.3061 0.3061 0.3409 1.28e-06 2eky-a2-m1-cG_2eky-a2-m1-cE
9 2eky-a2-m1-cH 96 88 0.3061 0.3125 0.3409 1.34e-06 2eky-a2-m1-cG_2eky-a2-m1-cH
10 2eky-a2-m1-cG 96 88 0.3061 0.3125 0.3409 1.34e-06 2eky-a2-m1-cG_2eky-a2-m1-cE, 2eky-a2-m1-cG_2eky-a2-m1-cH
11 2eky-a1-m1-cC 99 88 0.3061 0.3030 0.3409 1.36e-06 2eky-a1-m1-cC_2eky-a1-m1-cB
12 2eky-a1-m1-cB 100 88 0.3061 0.3000 0.3409 1.54e-06 2eky-a1-m1-cC_2eky-a1-m1-cB
13 1lxn-a6-m2-cC 96 85 0.2857 0.2917 0.3294 6.36e-06 1lxn-a6-m2-cB_1lxn-a6-m2-cC
14 1lxn-a6-m2-cB 96 85 0.2857 0.2917 0.3294 6.36e-06 1lxn-a6-m1-cA_1lxn-a6-m2-cB, 1lxn-a6-m2-cB_1lxn-a6-m2-cC
15 1lxn-a6-m1-cA 96 85 0.2857 0.2917 0.3294 6.36e-06 1lxn-a6-m1-cA_1lxn-a6-m2-cB
16 1lxn-a5-m1-cD 96 85 0.2857 0.2917 0.3294 6.36e-06 1lxn-a5-m1-cB_1lxn-a5-m1-cD, 1lxn-a5-m1-cC_1lxn-a5-m1-cD
17 1lxn-a5-m1-cC 96 85 0.2857 0.2917 0.3294 6.36e-06 1lxn-a5-m1-cC_1lxn-a5-m1-cD
18 1lxn-a5-m1-cB 96 85 0.2857 0.2917 0.3294 6.36e-06 1lxn-a5-m1-cB_1lxn-a5-m1-cD
19 2ibo-a1-m1-cD 87 89 0.2959 0.3333 0.3258 0.061 2ibo-a1-m1-cA_2ibo-a1-m1-cD, 2ibo-a1-m1-cB_2ibo-a1-m1-cD, 2ibo-a1-m1-cC_2ibo-a1-m1-cD
20 2ibo-a1-m1-cC 87 89 0.2959 0.3333 0.3258 0.061 2ibo-a1-m1-cC_2ibo-a1-m1-cD
21 2ibo-a1-m1-cB 87 89 0.2959 0.3333 0.3258 0.061 2ibo-a1-m1-cB_2ibo-a1-m1-cD
22 2ibo-a1-m1-cA 87 89 0.2959 0.3333 0.3258 0.061 2ibo-a1-m1-cA_2ibo-a1-m1-cD
23 6w6a-a1-m1-cA 249 28 0.1633 0.0643 0.5714 0.41 6w6a-a1-m1-cB_6w6a-a1-m1-cA
24 6w6a-a1-m1-cB 246 28 0.1633 0.0650 0.5714 0.45 6w6a-a1-m1-cB_6w6a-a1-m1-cA
25 1j98-a1-m2-cA 153 77 0.2041 0.1307 0.2597 2.7 1j98-a1-m1-cA_1j98-a1-m2-cA
26 1j98-a1-m1-cA 153 77 0.2041 0.1307 0.2597 2.7 1j98-a1-m1-cA_1j98-a1-m2-cA
27 3kae-a2-m1-cB 231 34 0.1429 0.0606 0.4118 4.6 3kae-a2-m1-cD_3kae-a2-m1-cB
28 5eqa-a2-m1-cD 253 50 0.1429 0.0553 0.2800 5.2 5eqa-a2-m1-cD_5eqa-a2-m1-cC
29 3kae-a2-m1-cD 227 34 0.1429 0.0617 0.4118 5.2 3kae-a2-m1-cD_3kae-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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