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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
SRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGSRRPWV
LGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVSWN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7d0e-a1-m2-cA 96 96 1.0000 1.0000 1.0000 4.45e-69 7d0e-a1-m1-cA_7d0e-a1-m2-cA
2 7d0e-a1-m1-cA 96 96 1.0000 1.0000 1.0000 4.45e-69 7d0e-a1-m1-cA_7d0e-a1-m2-cA
3 6gma-a2-m1-cD 131 96 0.9792 0.7176 0.9792 2.35e-66 6gma-a2-m1-cC_6gma-a2-m1-cD
4 6gma-a2-m1-cC 130 96 0.9688 0.7154 0.9688 1.98e-65 6gma-a2-m1-cC_6gma-a2-m1-cD
5 4d9u-a2-m2-cA 307 32 0.1354 0.0423 0.4062 0.10 4d9u-a2-m1-cA_4d9u-a2-m2-cA
6 4d9u-a2-m1-cA 307 32 0.1354 0.0423 0.4062 0.10 4d9u-a2-m1-cA_4d9u-a2-m2-cA
7 2wnt-a1-m1-cB 285 32 0.1354 0.0456 0.4062 0.14 2wnt-a1-m1-cA_2wnt-a1-m1-cB
8 2wnt-a1-m1-cA 281 32 0.1354 0.0463 0.4062 0.16 2wnt-a1-m1-cA_2wnt-a1-m1-cB
9 4nif-a1-m1-cD 313 32 0.1354 0.0415 0.4062 0.17 4nif-a1-m1-cA_4nif-a1-m1-cD
10 4nif-a1-m1-cA 313 32 0.1354 0.0415 0.4062 0.17 4nif-a1-m1-cA_4nif-a1-m1-cD
11 1tzs-a1-m2-cA 322 56 0.1979 0.0590 0.3393 0.32 1tzs-a1-m1-cA_1tzs-a1-m2-cA
12 1tzs-a1-m1-cA 322 56 0.1979 0.0590 0.3393 0.32 1tzs-a1-m1-cA_1tzs-a1-m2-cA
13 1t8t-a2-m2-cB 271 59 0.1771 0.0627 0.2881 0.62 1t8t-a2-m1-cA_1t8t-a2-m2-cB, 1t8t-a2-m2-cA_1t8t-a2-m2-cB
14 1t8u-a2-m2-cA 268 59 0.1771 0.0634 0.2881 0.63 1t8u-a2-m1-cA_1t8u-a2-m2-cA
15 1t8u-a2-m1-cA 268 59 0.1771 0.0634 0.2881 0.63 1t8u-a2-m1-cA_1t8u-a2-m2-cA
16 1t8t-a2-m2-cA 268 59 0.1771 0.0634 0.2881 0.63 1t8t-a2-m2-cA_1t8t-a2-m2-cB
17 1t8t-a2-m1-cA 268 59 0.1771 0.0634 0.2881 0.63 1t8t-a2-m1-cA_1t8t-a2-m2-cB
18 4o2z-a1-m2-cA 363 35 0.1250 0.0331 0.3429 1.7 4o2z-a1-m1-cA_4o2z-a1-m2-cA
19 4o2z-a1-m1-cA 363 35 0.1250 0.0331 0.3429 1.7 4o2z-a1-m1-cA_4o2z-a1-m2-cA
20 1smr-a8-m5-cG 331 59 0.1875 0.0544 0.3051 1.8 1smr-a8-m5-cG_1smr-a8-m1-cE
21 1smr-a8-m1-cE 331 59 0.1875 0.0544 0.3051 1.8 1smr-a8-m5-cG_1smr-a8-m1-cE
22 1smr-a6-m4-cG 331 59 0.1875 0.0544 0.3051 1.8 1smr-a6-m4-cG_1smr-a6-m1-cA
23 1smr-a6-m1-cA 331 59 0.1875 0.0544 0.3051 1.8 1smr-a6-m4-cG_1smr-a6-m1-cA
24 1psa-a1-m1-cB 326 47 0.1354 0.0399 0.2766 3.7 1psa-a1-m1-cA_1psa-a1-m1-cB
25 1psa-a1-m1-cA 326 47 0.1354 0.0399 0.2766 3.7 1psa-a1-m1-cA_1psa-a1-m1-cB
26 4gz9-a2-m2-cA 562 17 0.1042 0.0178 0.5882 4.8 4gz9-a2-m1-cA_4gz9-a2-m2-cA
27 4gz9-a2-m1-cA 562 17 0.1042 0.0178 0.5882 4.8 4gz9-a2-m1-cA_4gz9-a2-m2-cA
28 5wvd-a1-m1-cA 241 32 0.1250 0.0498 0.3750 5.4 5wvd-a1-m1-cB_5wvd-a1-m1-cA
29 3gcu-a2-m1-cA 339 75 0.1771 0.0501 0.2267 7.2 3gcu-a2-m1-cB_3gcu-a2-m1-cA
30 2psg-a1-m2-cA 369 45 0.1250 0.0325 0.2667 9.0 2psg-a1-m2-cA_2psg-a1-m1-cA
31 2psg-a1-m1-cA 369 45 0.1250 0.0325 0.2667 9.0 2psg-a1-m2-cA_2psg-a1-m1-cA
32 3bio-a2-m3-cA 280 25 0.1042 0.0357 0.4000 9.2 3bio-a2-m3-cA_3bio-a2-m3-cB
33 3bio-a2-m3-cB 281 25 0.1042 0.0356 0.4000 9.7 3bio-a2-m2-cB_3bio-a2-m3-cB, 3bio-a2-m3-cA_3bio-a2-m3-cB
34 3bio-a2-m2-cB 281 25 0.1042 0.0356 0.4000 9.7 3bio-a2-m2-cB_3bio-a2-m3-cB
35 3e7o-a1-m2-cB 326 87 0.2083 0.0613 0.2299 9.7 3e7o-a1-m2-cB_3e7o-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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