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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
SRSYRRAKEAVRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIE
LDRKILADAVRDPQAFEQVVNKVKEALQVQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ghj-a5-m1-cE 90 90 1.0000 1.0000 1.0000 7.88e-60 2ghj-a5-m1-cE_2ghj-a5-m1-cA
2 2ghj-a3-m1-cE 90 90 1.0000 1.0000 1.0000 7.88e-60 2ghj-a3-m1-cB_2ghj-a3-m1-cE
3 2ghj-a3-m1-cB 90 90 1.0000 1.0000 1.0000 7.88e-60 2ghj-a3-m1-cB_2ghj-a3-m1-cE
4 2ghj-a5-m1-cA 99 90 1.0000 0.9091 1.0000 1.27e-59 2ghj-a5-m1-cE_2ghj-a5-m1-cA
5 2ghj-a3-m1-cD 99 90 1.0000 0.9091 1.0000 1.27e-59 2ghj-a3-m1-cA_2ghj-a3-m1-cD
6 2ghj-a3-m1-cA 99 90 1.0000 0.9091 1.0000 1.27e-59 2ghj-a3-m1-cA_2ghj-a3-m1-cD
7 1ucr-a1-m1-cB 75 36 0.1444 0.1733 0.3611 0.90 1ucr-a1-m1-cA_1ucr-a1-m1-cB
8 1ucr-a1-m1-cA 74 36 0.1444 0.1757 0.3611 1.0 1ucr-a1-m1-cA_1ucr-a1-m1-cB
9 7zdy-a1-m1-cY 761 60 0.2000 0.0237 0.3000 5.4 7zdy-a1-m1-cY_7zdy-a1-m1-cW
10 7zdy-a1-m1-cW 763 60 0.2000 0.0236 0.3000 5.5 7zdy-a1-m1-cY_7zdy-a1-m1-cW
11 7dlw-a2-m1-cC 411 14 0.1111 0.0243 0.7143 7.8 7dlw-a2-m1-cC_7dlw-a2-m1-cD
12 4nar-a2-m2-cA 411 39 0.1444 0.0316 0.3333 8.1 4nar-a2-m1-cA_4nar-a2-m2-cA
13 4nar-a2-m1-cA 411 39 0.1444 0.0316 0.3333 8.1 4nar-a2-m1-cA_4nar-a2-m2-cA
14 8h3m-a1-m1-cB 763 40 0.1778 0.0210 0.4000 8.2 8h3m-a1-m1-cB_8h3m-a1-m1-cA
15 7tge-a1-m1-cC 805 40 0.1778 0.0199 0.4000 8.2 7tge-a1-m1-cC_7tge-a1-m1-cA, 7tge-a1-m1-cC_7tge-a1-m1-cB
16 7t9j-a1-m1-cA 835 40 0.1778 0.0192 0.4000 8.2 7t9j-a1-m1-cA_7t9j-a1-m1-cC
17 7t9j-a1-m1-cB 836 40 0.1778 0.0191 0.4000 8.2 7t9j-a1-m1-cB_7t9j-a1-m1-cC
18 7xj8-a1-m1-cA 840 40 0.1778 0.0190 0.4000 8.2 7xj8-a1-m1-cA_7xj8-a1-m1-cC
19 7tge-a1-m1-cB 842 40 0.1778 0.0190 0.4000 8.2 7tge-a1-m1-cC_7tge-a1-m1-cB
20 7thk-a1-m1-cA 860 40 0.1778 0.0186 0.4000 8.2 7thk-a1-m1-cA_7thk-a1-m1-cB
21 7wlz-a1-m1-cC 863 40 0.1778 0.0185 0.4000 8.2 7wlz-a1-m1-cC_7wlz-a1-m1-cA, 7wlz-a1-m1-cC_7wlz-a1-m1-cB
22 8h3m-a1-m1-cA 910 40 0.1778 0.0176 0.4000 8.3 8h3m-a1-m1-cB_8h3m-a1-m1-cA
23 8h08-a1-m1-cB 933 40 0.1778 0.0171 0.4000 8.3 8h08-a1-m1-cB_8h08-a1-m1-cC
24 8h08-a1-m1-cC 948 40 0.1778 0.0169 0.4000 8.3 8h08-a1-m1-cB_8h08-a1-m1-cC
25 7xid-a1-m1-cA 963 40 0.1778 0.0166 0.4000 8.3 7xid-a1-m1-cA_7xid-a1-m1-cC
26 8h3n-a1-m1-cC 977 40 0.1778 0.0164 0.4000 8.3 8h3n-a1-m1-cC_8h3n-a1-m1-cA, 8h3n-a1-m1-cC_8h3n-a1-m1-cB
27 7tei-a1-m1-cC 983 40 0.1778 0.0163 0.4000 8.3 7tei-a1-m1-cC_7tei-a1-m1-cA, 7tei-a1-m1-cC_7tei-a1-m1-cB
28 8h3n-a1-m1-cB 985 40 0.1778 0.0162 0.4000 8.3 8h3n-a1-m1-cC_8h3n-a1-m1-cB
29 7xid-a1-m1-cC 998 40 0.1778 0.0160 0.4000 8.3 7xid-a1-m1-cA_7xid-a1-m1-cC, 7xid-a1-m1-cB_7xid-a1-m1-cC
30 7xid-a1-m1-cB 998 40 0.1778 0.0160 0.4000 8.3 7xid-a1-m1-cB_7xid-a1-m1-cC
31 7xic-a1-m1-cC 998 40 0.1778 0.0160 0.4000 8.3 7xic-a1-m1-cC_7xic-a1-m1-cA
32 7xic-a1-m1-cA 999 40 0.1778 0.0160 0.4000 8.3 7xic-a1-m1-cC_7xic-a1-m1-cA
33 7xst-a1-m1-cC 1008 40 0.1778 0.0159 0.4000 8.3 7xst-a1-m1-cC_7xst-a1-m1-cB
34 7xst-a1-m1-cB 1009 40 0.1778 0.0159 0.4000 8.3 7xst-a1-m1-cC_7xst-a1-m1-cB
35 7tm0-a1-m1-cB 1015 40 0.1778 0.0158 0.4000 8.3 7tm0-a1-m1-cB_7tm0-a1-m1-cA
36 7tm0-a1-m1-cA 1016 40 0.1778 0.0157 0.4000 8.3 7tm0-a1-m1-cB_7tm0-a1-m1-cA
37 8h3n-a1-m1-cA 1017 40 0.1778 0.0157 0.4000 8.3 8h3n-a1-m1-cC_8h3n-a1-m1-cA
38 7tei-a1-m1-cA 1019 40 0.1778 0.0157 0.4000 8.3 7tei-a1-m1-cC_7tei-a1-m1-cA
39 7thk-a1-m1-cC 1022 40 0.1778 0.0157 0.4000 8.3 7thk-a1-m1-cC_7thk-a1-m1-cB
40 7wlz-a1-m1-cA 1028 40 0.1778 0.0156 0.4000 8.3 7wlz-a1-m1-cC_7wlz-a1-m1-cA
41 7tge-a1-m1-cA 1030 40 0.1778 0.0155 0.4000 8.3 7tge-a1-m1-cC_7tge-a1-m1-cA
42 7t9j-a1-m1-cC 1032 40 0.1778 0.0155 0.4000 8.3 7t9j-a1-m1-cA_7t9j-a1-m1-cC, 7t9j-a1-m1-cB_7t9j-a1-m1-cC
43 7xj8-a1-m1-cC 1035 40 0.1778 0.0155 0.4000 8.3 7xj8-a1-m1-cA_7xj8-a1-m1-cC
44 7uz8-a1-m1-cC 1039 40 0.1778 0.0154 0.4000 8.3 7uz8-a1-m1-cC_7uz8-a1-m1-cB
45 7uz8-a1-m1-cB 1039 40 0.1778 0.0154 0.4000 8.3 7uz8-a1-m1-cC_7uz8-a1-m1-cB
46 7ya0-a1-m1-cC 1042 40 0.1778 0.0154 0.4000 8.3 7ya0-a1-m1-cC_7ya0-a1-m1-cB
47 7wlz-a1-m1-cB 1042 40 0.1778 0.0154 0.4000 8.3 7wlz-a1-m1-cC_7wlz-a1-m1-cB
48 7tei-a1-m1-cB 1042 40 0.1778 0.0154 0.4000 8.3 7tei-a1-m1-cC_7tei-a1-m1-cB
49 7thk-a1-m1-cB 1043 40 0.1778 0.0153 0.4000 8.3 7thk-a1-m1-cA_7thk-a1-m1-cB, 7thk-a1-m1-cC_7thk-a1-m1-cB
50 7ya0-a1-m1-cB 1045 40 0.1778 0.0153 0.4000 8.3 7ya0-a1-m1-cC_7ya0-a1-m1-cB
51 7y9z-a1-m1-cC 1062 40 0.1778 0.0151 0.4000 8.3 7y9z-a1-m1-cA_7y9z-a1-m1-cC
52 7y9z-a1-m1-cA 1062 40 0.1778 0.0151 0.4000 8.3 7y9z-a1-m1-cA_7y9z-a1-m1-cB, 7y9z-a1-m1-cA_7y9z-a1-m1-cC
53 7y9z-a1-m1-cB 1065 40 0.1778 0.0150 0.4000 8.3 7y9z-a1-m1-cA_7y9z-a1-m1-cB
54 8dzi-a1-m1-cE 1074 40 0.1778 0.0149 0.4000 8.3 8dzi-a1-m1-cE_8dzi-a1-m1-cA
55 8dzi-a1-m1-cA 1080 40 0.1778 0.0148 0.4000 8.3 8dzi-a1-m1-cE_8dzi-a1-m1-cA
56 7tb4-a1-m1-cA 1097 40 0.1778 0.0146 0.4000 8.3 7tb4-a1-m1-cA_7tb4-a1-m1-cC
57 7tcc-a1-m1-cB 1116 40 0.1778 0.0143 0.4000 8.3 7tcc-a1-m1-cC_7tcc-a1-m1-cB
58 7tcc-a1-m1-cC 1118 40 0.1778 0.0143 0.4000 8.3 7tcc-a1-m1-cC_7tcc-a1-m1-cB
59 7tb4-a1-m1-cC 1118 40 0.1778 0.0143 0.4000 8.3 7tb4-a1-m1-cA_7tb4-a1-m1-cC
60 7dlw-a2-m1-cD 414 14 0.1111 0.0242 0.7143 8.3 7dlw-a2-m1-cC_7dlw-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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