Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=50)
SSALDKLKEFGNTLEDKARELISRIKQSELSAKMREWFSETFQKVKEKLK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6nf3-a1-m2-cB 51 50 1.0000 0.9804 1.0000 2.63e-29 6nf3-a1-m1-cA_6nf3-a1-m2-cB
2 6dvu-a1-m1-cA 51 50 1.0000 0.9804 1.0000 2.90e-29 6dvu-a1-m1-cA_6dvu-a1-m2-cB
3 6dvu-a1-m2-cB 53 50 1.0000 0.9434 1.0000 2.91e-29 6dvu-a1-m1-cA_6dvu-a1-m2-cB
4 6dz6-a1-m1-cB 50 50 1.0000 1.0000 1.0000 3.00e-29 6dz6-a1-m1-cB_6dz6-a1-m1-cA
5 6dz6-a1-m1-cA 52 50 1.0000 0.9615 1.0000 3.01e-29 6dz6-a1-m1-cB_6dz6-a1-m1-cA
6 6nf3-a1-m1-cA 46 46 0.9200 1.0000 1.0000 1.07e-26 6nf3-a1-m1-cA_6nf3-a1-m2-cB
7 2fck-a1-m2-cA 171 25 0.2000 0.0585 0.4000 3.6 2fck-a1-m1-cA_2fck-a1-m2-cA
8 2fck-a1-m1-cA 171 25 0.2000 0.0585 0.4000 3.6 2fck-a1-m1-cA_2fck-a1-m2-cA
9 6oaw-a1-m1-cB 382 41 0.2600 0.0340 0.3171 5.6 6oaw-a1-m1-cA_6oaw-a1-m1-cB
10 6oaw-a1-m1-cA 379 29 0.2200 0.0290 0.3793 7.0 6oaw-a1-m1-cA_6oaw-a1-m1-cB
11 3drw-a1-m1-cA 460 20 0.1800 0.0196 0.4500 8.3 3drw-a1-m1-cB_3drw-a1-m1-cA
12 3drw-a1-m1-cB 450 20 0.1800 0.0200 0.4500 8.4 3drw-a1-m1-cB_3drw-a1-m1-cA
13 3kzp-a1-m1-cB 228 29 0.2400 0.0526 0.4138 8.6 3kzp-a1-m1-cA_3kzp-a1-m1-cB
14 3kzp-a1-m1-cA 228 29 0.2400 0.0526 0.4138 8.6 3kzp-a1-m1-cA_3kzp-a1-m1-cB

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600