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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
STATAQAMAKRHATLYGDPAGQSQASRIIDVKPGMRYVNVDSGETVAFRAGEKIVAWTFA
QMVRDTSVDLGLLMPDLPGSAGVRVYIDRSDLF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2wtp-a1-m1-cA 93 93 1.0000 1.0000 1.0000 5.68e-65 2wtp-a1-m1-cB_2wtp-a1-m1-cA
2 2wtp-a1-m1-cB 89 89 0.9570 1.0000 1.0000 6.68e-62 2wtp-a1-m1-cB_2wtp-a1-m1-cA
3 5a6b-a2-m1-cD 616 70 0.2043 0.0308 0.2714 2.0 5a6b-a2-m1-cC_5a6b-a2-m1-cD
4 5a6b-a2-m1-cC 610 70 0.2043 0.0311 0.2714 2.1 5a6b-a2-m1-cC_5a6b-a2-m1-cD
5 2rau-a2-m2-cA 345 62 0.1720 0.0464 0.2581 2.8 2rau-a2-m1-cA_2rau-a2-m2-cA
6 2rau-a2-m1-cA 345 62 0.1720 0.0464 0.2581 2.8 2rau-a2-m1-cA_2rau-a2-m2-cA
7 7tch-a1-m1-cC 245 42 0.1505 0.0571 0.3333 3.4 7tch-a1-m1-cB_7tch-a1-m1-cC
8 7tch-a1-m1-cB 245 42 0.1505 0.0571 0.3333 3.4 7tch-a1-m1-cB_7tch-a1-m1-cC
9 7tcg-a1-m1-cC 244 42 0.1505 0.0574 0.3333 3.4 7tcg-a1-m1-cB_7tcg-a1-m1-cC
10 7tcg-a1-m1-cB 244 42 0.1505 0.0574 0.3333 3.4 7tcg-a1-m1-cB_7tcg-a1-m1-cC
11 6gyr-a2-m1-cB 583 20 0.1075 0.0172 0.5000 4.4 6gyr-a2-m1-cB_6gyr-a2-m1-cD
12 6gyr-a2-m1-cD 584 20 0.1075 0.0171 0.5000 4.4 6gyr-a2-m1-cB_6gyr-a2-m1-cD
13 1p1m-a2-m2-cA 404 54 0.1505 0.0347 0.2593 5.5 1p1m-a2-m1-cA_1p1m-a2-m2-cA
14 1p1m-a2-m1-cA 404 54 0.1505 0.0347 0.2593 5.5 1p1m-a2-m1-cA_1p1m-a2-m2-cA
15 1reo-a1-m2-cA 484 80 0.2258 0.0434 0.2625 7.6 1reo-a1-m1-cA_1reo-a1-m2-cA
16 1reo-a1-m1-cA 484 80 0.2258 0.0434 0.2625 7.6 1reo-a1-m1-cA_1reo-a1-m2-cA
17 1w7j-a1-m2-cA 752 37 0.1290 0.0160 0.3243 8.3 1w7j-a1-m1-cA_1w7j-a1-m2-cA
18 1w7j-a1-m1-cA 752 37 0.1290 0.0160 0.3243 8.3 1w7j-a1-m1-cA_1w7j-a1-m2-cA
19 8aht-a2-m1-cC 136 46 0.1398 0.0956 0.2826 8.3 8aht-a2-m1-cC_8aht-a2-m1-cA
20 8aht-a3-m1-cD 131 46 0.1398 0.0992 0.2826 8.4 8aht-a3-m1-cD_8aht-a3-m1-cA
21 2dfs-a1-m1-cM 994 37 0.1290 0.0121 0.3243 8.4 2dfs-a1-m1-cA_2dfs-a1-m1-cM
22 2dfs-a1-m1-cA 994 37 0.1290 0.0121 0.3243 8.4 2dfs-a1-m1-cA_2dfs-a1-m1-cM
23 8aht-a4-m1-cA 140 46 0.1398 0.0929 0.2826 8.4 8aht-a4-m1-cA_8aht-a4-m1-cB
24 8aht-a3-m1-cA 140 46 0.1398 0.0929 0.2826 8.4 8aht-a3-m1-cD_8aht-a3-m1-cA
25 8aht-a2-m1-cA 140 46 0.1398 0.0929 0.2826 8.4 8aht-a2-m1-cC_8aht-a2-m1-cA
26 7yv9-a1-m1-cH 1061 37 0.1290 0.0113 0.3243 8.4 7yv9-a1-m1-cH_7yv9-a1-m1-cA
27 7yv9-a1-m1-cA 1067 37 0.1290 0.0112 0.3243 8.4 7yv9-a1-m1-cH_7yv9-a1-m1-cA
28 8aht-a4-m1-cB 140 46 0.1398 0.0929 0.2826 8.7 8aht-a4-m1-cA_8aht-a4-m1-cB

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Reference:
Jacob Schwartz et al.

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