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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
STPFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPSTATFYDAKKFLIQEGFVKERQERG
EKRLYLTEKGKLFAISLKTAIETYKQIKKRHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1tbx-a2-m2-cA 93 93 1.0000 1.0000 1.0000 1.78e-64 1tbx-a2-m2-cB_1tbx-a2-m2-cA
2 1tbx-a2-m1-cA 93 93 1.0000 1.0000 1.0000 1.78e-64 1tbx-a2-m2-cB_1tbx-a2-m1-cA
3 1tbx-a2-m2-cB 89 88 0.9462 0.9888 1.0000 1.22e-59 1tbx-a2-m2-cB_1tbx-a2-m1-cA, 1tbx-a2-m2-cB_1tbx-a2-m2-cA
4 4lmy-a1-m1-cA 149 32 0.1505 0.0940 0.4375 0.14 4lmy-a1-m1-cA_4lmy-a1-m1-cB
5 4lmy-a1-m1-cB 157 32 0.1505 0.0892 0.4375 0.16 4lmy-a1-m1-cA_4lmy-a1-m1-cB
6 8a9a-a1-m1-cB 809 82 0.2796 0.0321 0.3171 0.74 8a9a-a1-m1-cA_8a9a-a1-m1-cB
7 8a9a-a1-m1-cA 809 82 0.2796 0.0321 0.3171 0.74 8a9a-a1-m1-cA_8a9a-a1-m1-cB
8 3s2w-a1-m1-cA 142 69 0.2688 0.1761 0.3623 1.3 3s2w-a1-m1-cB_3s2w-a1-m1-cA
9 2pg4-a4-m4-cA 90 52 0.2258 0.2333 0.4038 1.7 2pg4-a4-m4-cA_2pg4-a4-m4-cB
10 2pg4-a3-m3-cA 90 52 0.2258 0.2333 0.4038 1.7 2pg4-a3-m1-cA_2pg4-a3-m3-cA
11 2pg4-a3-m1-cA 90 52 0.2258 0.2333 0.4038 1.7 2pg4-a3-m1-cA_2pg4-a3-m3-cA
12 2pg4-a4-m4-cB 90 52 0.2258 0.2333 0.4038 1.8 2pg4-a4-m1-cB_2pg4-a4-m4-cB, 2pg4-a4-m4-cA_2pg4-a4-m4-cB
13 2pg4-a4-m1-cB 90 52 0.2258 0.2333 0.4038 1.8 2pg4-a4-m1-cB_2pg4-a4-m4-cB
14 1vcv-a2-m2-cB 226 77 0.2258 0.0929 0.2727 1.9 1vcv-a2-m1-cA_1vcv-a2-m2-cB
15 1vcv-a2-m1-cA 226 77 0.2258 0.0929 0.2727 1.9 1vcv-a2-m1-cA_1vcv-a2-m2-cB
16 1vcv-a1-m1-cB 226 77 0.2258 0.0929 0.2727 1.9 1vcv-a1-m1-cA_1vcv-a1-m1-cB
17 1vcv-a1-m1-cA 226 77 0.2258 0.0929 0.2727 1.9 1vcv-a1-m1-cA_1vcv-a1-m1-cB
18 3bh1-a1-m1-cD 487 34 0.1398 0.0267 0.3824 2.5 3bh1-a1-m1-cB_3bh1-a1-m1-cD, 3bh1-a1-m1-cC_3bh1-a1-m1-cD
19 3bh1-a1-m1-cB 486 34 0.1398 0.0267 0.3824 2.6 3bh1-a1-m1-cB_3bh1-a1-m1-cD, 3bh1-a1-m1-cC_3bh1-a1-m1-cB
20 3bh1-a1-m1-cC 483 34 0.1398 0.0269 0.3824 2.7 3bh1-a1-m1-cC_3bh1-a1-m1-cB, 3bh1-a1-m1-cC_3bh1-a1-m1-cD
21 4mte-a1-m1-cD 151 48 0.1828 0.1126 0.3542 4.5 4mte-a1-m1-cA_4mte-a1-m1-cD
22 4mte-a1-m1-cA 149 48 0.1828 0.1141 0.3542 4.9 4mte-a1-m1-cA_4mte-a1-m1-cD
23 6nzj-a1-m1-cB 273 37 0.1290 0.0440 0.3243 7.5 6nzj-a1-m1-cA_6nzj-a1-m1-cB
24 6nzj-a1-m1-cA 273 37 0.1290 0.0440 0.3243 7.5 6nzj-a1-m1-cA_6nzj-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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