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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
SVRPVIGSVAPESLAAQAGLEAGQELLAVDGEPVTGWNGVNLQLVRRLGESGTLEVRVQE
KGSNVDSTHQVRLDGWLKGEDNPDPIASLGIRPWRP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7xfs-a1-m1-cB 96 96 1.0000 1.0000 1.0000 4.10e-64 7xfs-a1-m1-cA_7xfs-a1-m1-cB
2 7xfs-a1-m1-cA 96 96 1.0000 1.0000 1.0000 4.10e-64 7xfs-a1-m1-cA_7xfs-a1-m1-cB
3 2zpl-a4-m1-cB 93 93 0.4062 0.4194 0.4194 1.29e-14 2zpl-a4-m1-cA_2zpl-a4-m1-cB, 2zpl-a4-m1-cC_2zpl-a4-m1-cB
4 2zpl-a4-m1-cA 91 92 0.3958 0.4176 0.4130 4.64e-14 2zpl-a4-m1-cA_2zpl-a4-m1-cB
5 2zpl-a4-m1-cC 88 93 0.3854 0.4205 0.3978 1.01e-13 2zpl-a4-m1-cC_2zpl-a4-m1-cB
6 3id3-a1-m1-cB 89 67 0.2396 0.2584 0.3433 3.96e-07 3id3-a1-m1-cA_3id3-a1-m1-cB
7 3id3-a1-m1-cA 89 67 0.2396 0.2584 0.3433 3.96e-07 3id3-a1-m1-cA_3id3-a1-m1-cB
8 2zpm-a2-m2-cA 79 65 0.2812 0.3418 0.4154 2.37e-04 2zpm-a2-m1-cA_2zpm-a2-m2-cA
9 2zpm-a2-m1-cA 79 65 0.2812 0.3418 0.4154 2.37e-04 2zpm-a2-m1-cA_2zpm-a2-m2-cA
10 2w7r-a1-m1-cB 95 52 0.1979 0.2000 0.3654 0.016 2w7r-a1-m1-cA_2w7r-a1-m1-cB
11 2w7r-a1-m1-cA 95 52 0.1979 0.2000 0.3654 0.016 2w7r-a1-m1-cA_2w7r-a1-m1-cB
12 1ky9-a1-m6-cA 299 61 0.1875 0.0602 0.2951 0.044 1ky9-a1-m1-cA_1ky9-a1-m6-cA, 1ky9-a1-m5-cA_1ky9-a1-m6-cA
13 1ky9-a1-m5-cA 299 61 0.1875 0.0602 0.2951 0.044 1ky9-a1-m5-cA_1ky9-a1-m6-cA
14 1ky9-a1-m1-cA 299 61 0.1875 0.0602 0.2951 0.044 1ky9-a1-m1-cA_1ky9-a1-m6-cA
15 1ky9-a2-m9-cB 383 61 0.1875 0.0470 0.2951 0.056 1ky9-a2-m7-cB_1ky9-a2-m9-cB
16 1ky9-a2-m7-cB 383 61 0.1875 0.0470 0.2951 0.056 1ky9-a2-m7-cB_1ky9-a2-m9-cB
17 2zle-a1-m1-cM 396 39 0.1250 0.0303 0.3077 0.13 2zle-a1-m1-cG_2zle-a1-m1-cM
18 2zle-a1-m1-cI 396 39 0.1250 0.0303 0.3077 0.13 2zle-a1-m1-cF_2zle-a1-m1-cI
19 2zle-a1-m1-cG 396 39 0.1250 0.0303 0.3077 0.13 2zle-a1-m1-cG_2zle-a1-m1-cM
20 2zle-a1-m1-cF 396 39 0.1250 0.0303 0.3077 0.13 2zle-a1-m1-cF_2zle-a1-m1-cI
21 3mh4-a2-m9-cB 383 39 0.1250 0.0313 0.3077 0.15 3mh4-a2-m11-cB_3mh4-a2-m9-cB, 3mh4-a2-m7-cB_3mh4-a2-m9-cB
22 3mh4-a2-m7-cB 383 39 0.1250 0.0313 0.3077 0.15 3mh4-a2-m7-cB_3mh4-a2-m9-cB
23 3mh4-a2-m11-cB 383 39 0.1250 0.0313 0.3077 0.15 3mh4-a2-m11-cB_3mh4-a2-m9-cB
24 4l8n-a1-m2-cA 440 33 0.1458 0.0318 0.4242 0.15 4l8n-a1-m1-cA_4l8n-a1-m2-cA
25 4l8n-a1-m1-cA 440 33 0.1458 0.0318 0.4242 0.15 4l8n-a1-m1-cA_4l8n-a1-m2-cA
26 7qsb-a1-m1-cB 80 30 0.1458 0.1750 0.4667 0.16 7qsb-a1-m1-cB_7qsb-a1-m1-cA
27 7qsa-a1-m1-cA 85 30 0.1458 0.1647 0.4667 0.18 7qsa-a1-m1-cB_7qsa-a1-m1-cA
28 6jjk-a1-m2-cB 392 39 0.1250 0.0306 0.3077 0.18 6jjk-a1-m2-cA_6jjk-a1-m2-cB
29 5vwi-a1-m1-cB 87 30 0.1458 0.1609 0.4667 0.19 5vwi-a1-m1-cB_5vwi-a1-m1-cA
30 5vwi-a1-m1-cA 92 30 0.1458 0.1522 0.4667 0.19 5vwi-a1-m1-cB_5vwi-a1-m1-cA
31 6jjo-a1-m2-cE 388 39 0.1250 0.0309 0.3077 0.20 6jjo-a1-m2-cA_6jjo-a1-m2-cE
32 6jjo-a1-m1-cE 388 39 0.1250 0.0309 0.3077 0.20 6jjo-a1-m2-cF_6jjo-a1-m1-cE
33 6jjo-a1-m2-cA 381 39 0.1250 0.0315 0.3077 0.20 6jjo-a1-m2-cA_6jjo-a1-m2-cE
34 6jjk-a1-m2-cA 381 39 0.1250 0.0315 0.3077 0.20 6jjk-a1-m2-cA_6jjk-a1-m2-cB
35 6jjo-a1-m2-cF 379 39 0.1250 0.0317 0.3077 0.20 6jjo-a1-m2-cF_6jjo-a1-m1-cE
36 7qsb-a1-m1-cA 84 29 0.1458 0.1667 0.4828 0.20 7qsb-a1-m1-cB_7qsb-a1-m1-cA
37 7w70-a1-m1-cB 87 36 0.1354 0.1494 0.3611 0.26 7w70-a1-m1-cA_7w70-a1-m1-cB
38 7w70-a1-m1-cA 87 36 0.1354 0.1494 0.3611 0.26 7w70-a1-m1-cA_7w70-a1-m1-cB
39 7xft-a1-m2-cA 86 56 0.1979 0.2209 0.3393 0.34 7xft-a1-m1-cA_7xft-a1-m2-cA
40 7xft-a1-m1-cA 86 56 0.1979 0.2209 0.3393 0.34 7xft-a1-m1-cA_7xft-a1-m2-cA
41 3khf-a3-m1-cA 96 52 0.2083 0.2083 0.3846 0.40 3khf-a3-m1-cA_3khf-a3-m1-cB
42 3khf-a3-m1-cB 97 52 0.2083 0.2062 0.3846 0.43 3khf-a3-m1-cA_3khf-a3-m1-cB
43 7xfu-a1-m1-cB 92 56 0.1979 0.2065 0.3393 0.58 7xfu-a1-m1-cA_7xfu-a1-m1-cB
44 7xfu-a1-m1-cA 92 56 0.1979 0.2065 0.3393 0.58 7xfu-a1-m1-cA_7xfu-a1-m1-cB
45 3kze-a1-m1-cC 87 41 0.1354 0.1494 0.3171 0.64 3kze-a1-m1-cC_3kze-a1-m1-cA
46 3kze-a1-m1-cA 93 41 0.1354 0.1398 0.3171 0.78 3kze-a1-m1-cC_3kze-a1-m1-cA
47 6q7i-a1-m1-cB 768 71 0.2396 0.0299 0.3239 1.2 6q7i-a1-m1-cB_6q7i-a1-m1-cA
48 6q7i-a1-m1-cA 769 71 0.2396 0.0299 0.3239 1.2 6q7i-a1-m1-cB_6q7i-a1-m1-cA
49 4c2e-a1-m1-cB 435 69 0.1667 0.0368 0.2319 1.5 4c2e-a1-m1-cA_4c2e-a1-m1-cB
50 4c2e-a1-m1-cA 435 69 0.1667 0.0368 0.2319 1.5 4c2e-a1-m1-cA_4c2e-a1-m1-cB
51 4c2d-a2-m1-cC 433 69 0.1667 0.0370 0.2319 1.6 4c2d-a2-m1-cD_4c2d-a2-m1-cC
52 2v90-a2-m1-cF 95 60 0.2396 0.2421 0.3833 2.4 2v90-a2-m1-cD_2v90-a2-m1-cF
53 2v90-a2-m1-cB 95 60 0.2396 0.2421 0.3833 2.4 2v90-a2-m1-cD_2v90-a2-m1-cB
54 2v90-a2-m1-cD 93 60 0.2396 0.2473 0.3833 2.5 2v90-a2-m1-cD_2v90-a2-m1-cB, 2v90-a2-m1-cD_2v90-a2-m1-cF
55 5jd8-a1-m3-cA 272 30 0.1250 0.0441 0.4000 2.5 5jd8-a1-m2-cA_5jd8-a1-m3-cA
56 5jd8-a1-m2-cA 272 30 0.1250 0.0441 0.4000 2.5 5jd8-a1-m2-cA_5jd8-a1-m3-cA
57 5mua-a1-m1-cA 269 53 0.1875 0.0669 0.3396 2.6 5mua-a1-m1-cA_5mua-a1-m1-cB
58 2exx-a1-m1-cA 305 62 0.2188 0.0689 0.3387 2.7 2exx-a1-m1-cB_2exx-a1-m1-cA
59 5mua-a1-m1-cB 275 53 0.1875 0.0655 0.3396 2.8 5mua-a1-m1-cA_5mua-a1-m1-cB
60 3mcu-a1-m1-cE 173 35 0.1667 0.0925 0.4571 3.6 3mcu-a1-m1-cE_3mcu-a1-m1-cF
61 3mcu-a1-m1-cF 177 35 0.1667 0.0904 0.4571 3.8 3mcu-a1-m1-cE_3mcu-a1-m1-cF
62 3mcu-a1-m1-cD 178 35 0.1667 0.0899 0.4571 3.8 3mcu-a1-m1-cB_3mcu-a1-m1-cD
63 3ps4-a2-m1-cC 96 52 0.1979 0.1979 0.3654 4.0 3ps4-a2-m1-cC_3ps4-a2-m1-cB
64 3ps4-a2-m1-cB 97 52 0.1979 0.1959 0.3654 4.0 3ps4-a2-m1-cC_3ps4-a2-m1-cB
65 3mcu-a1-m1-cB 177 35 0.1667 0.0904 0.4571 4.0 3mcu-a1-m1-cB_3mcu-a1-m1-cD
66 6tni-a1-m1-ca 1067 74 0.2188 0.0197 0.2838 4.7 6tni-a1-m1-cA_6tni-a1-m1-ca
67 6tni-a1-m1-cA 1067 74 0.2188 0.0197 0.2838 4.7 6tni-a1-m1-cA_6tni-a1-m1-ca
68 3r68-a2-m2-cA 85 58 0.1979 0.2235 0.3276 5.2 3r68-a2-m1-cA_3r68-a2-m2-cA
69 3r68-a2-m1-cA 85 58 0.1979 0.2235 0.3276 5.2 3r68-a2-m1-cA_3r68-a2-m2-cA
70 2gey-a3-m2-cD 132 27 0.1250 0.0909 0.4444 7.5 2gey-a3-m2-cD_2gey-a3-m1-cA, 2gey-a3-m2-cD_2gey-a3-m2-cC
71 3r69-a3-m1-cA 85 54 0.1875 0.2118 0.3333 7.7 3r69-a3-m1-cA_3r69-a3-m1-cB
72 3gco-a1-m3-cA 302 29 0.1042 0.0331 0.3448 7.9 3gco-a1-m2-cA_3gco-a1-m3-cA
73 3gco-a1-m2-cA 302 29 0.1042 0.0331 0.3448 7.9 3gco-a1-m2-cA_3gco-a1-m3-cA
74 1te0-a3-m9-cA 318 29 0.1042 0.0314 0.3448 8.6 1te0-a3-m23-cB_1te0-a3-m9-cA, 1te0-a3-m5-cA_1te0-a3-m9-cA
75 1te0-a3-m5-cA 318 29 0.1042 0.0314 0.3448 8.6 1te0-a3-m5-cA_1te0-a3-m9-cA
76 1te0-a3-m23-cB 318 29 0.1042 0.0314 0.3448 8.6 1te0-a3-m23-cB_1te0-a3-m9-cA
77 5tyt-a2-m2-cD 89 39 0.1458 0.1573 0.3590 9.3 5tyt-a2-m1-cC_5tyt-a2-m2-cD
78 5tyt-a2-m1-cC 87 39 0.1458 0.1609 0.3590 9.5 5tyt-a2-m1-cC_5tyt-a2-m2-cD
79 3r69-a3-m1-cB 87 54 0.1875 0.2069 0.3333 9.7 3r69-a3-m1-cA_3r69-a3-m1-cB

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Reference:
Jacob Schwartz et al.

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