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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=75)
SVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYELE
LTHRKMKDAYEEEIK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vp8-a1-m1-cB 80 75 1.0000 0.9375 1.0000 1.23e-49 3vp8-a1-m1-cD_3vp8-a1-m1-cB
2 3vp8-a1-m1-cA 75 75 1.0000 1.0000 1.0000 1.24e-49 3vp8-a1-m1-cA_3vp8-a1-m1-cD
3 3vp8-a1-m1-cD 78 75 1.0000 0.9615 1.0000 1.31e-49 3vp8-a1-m1-cA_3vp8-a1-m1-cD, 3vp8-a1-m1-cC_3vp8-a1-m1-cD, 3vp8-a1-m1-cD_3vp8-a1-m1-cB
4 3vp8-a1-m1-cC 77 75 1.0000 0.9740 1.0000 1.55e-49 3vp8-a1-m1-cC_3vp8-a1-m1-cD
5 3vp9-a1-m2-cB 77 65 0.8533 0.8312 0.9846 6.50e-41 3vp9-a1-m2-cA_3vp9-a1-m2-cB
6 3vp9-a1-m2-cA 70 62 0.8133 0.8714 0.9839 5.26e-39 3vp9-a1-m1-cA_3vp9-a1-m2-cA, 3vp9-a1-m2-cA_3vp9-a1-m2-cB
7 3vp9-a1-m1-cA 70 62 0.8133 0.8714 0.9839 5.26e-39 3vp9-a1-m1-cA_3vp9-a1-m2-cA
8 1zjc-a1-m2-cA 413 29 0.1733 0.0315 0.4483 5.9 1zjc-a1-m1-cA_1zjc-a1-m2-cA
9 1zjc-a1-m1-cA 413 29 0.1733 0.0315 0.4483 5.9 1zjc-a1-m1-cA_1zjc-a1-m2-cA
10 5ffp-a1-m1-cB 150 22 0.1467 0.0733 0.5000 8.5 5ffp-a1-m1-cA_5ffp-a1-m1-cB
11 5ffp-a1-m1-cA 150 22 0.1467 0.0733 0.5000 8.5 5ffp-a1-m1-cA_5ffp-a1-m1-cB
12 6nmx-a2-m1-cB 349 25 0.1333 0.0287 0.4000 9.4 6nmx-a2-m1-cD_6nmx-a2-m1-cB
13 6nmx-a2-m1-cD 348 25 0.1333 0.0287 0.4000 9.9 6nmx-a2-m1-cD_6nmx-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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