Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
TASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYE
LELTHRKMKDAYEEEIKHLK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vp8-a1-m1-cB 80 80 1.0000 1.0000 1.0000 1.10e-53 3vp8-a1-m1-cD_3vp8-a1-m1-cB
2 3vp8-a1-m1-cD 78 78 0.9750 1.0000 1.0000 2.32e-52 3vp8-a1-m1-cA_3vp8-a1-m1-cD, 3vp8-a1-m1-cC_3vp8-a1-m1-cD, 3vp8-a1-m1-cD_3vp8-a1-m1-cB
3 3vp8-a1-m1-cC 77 77 0.9625 1.0000 1.0000 2.12e-51 3vp8-a1-m1-cC_3vp8-a1-m1-cD
4 3vp8-a1-m1-cA 75 75 0.9375 1.0000 1.0000 1.31e-49 3vp8-a1-m1-cA_3vp8-a1-m1-cD
5 3vp9-a1-m2-cB 77 68 0.8375 0.8701 0.9853 2.28e-43 3vp9-a1-m2-cA_3vp9-a1-m2-cB
6 3vp9-a1-m2-cA 70 65 0.8000 0.9143 0.9846 1.43e-41 3vp9-a1-m1-cA_3vp9-a1-m2-cA, 3vp9-a1-m2-cA_3vp9-a1-m2-cB
7 3vp9-a1-m1-cA 70 65 0.8000 0.9143 0.9846 1.43e-41 3vp9-a1-m1-cA_3vp9-a1-m2-cA
8 4f23-a1-m1-cC 509 30 0.1500 0.0236 0.4000 5.8 4f23-a1-m1-cB_4f23-a1-m1-cC
9 4f23-a1-m1-cB 509 30 0.1500 0.0236 0.4000 5.8 4f23-a1-m1-cB_4f23-a1-m1-cC
10 4kpq-a1-m1-cF 165 30 0.1500 0.0727 0.4000 6.6 4kpq-a1-m1-cD_4kpq-a1-m1-cF
11 4kpq-a1-m1-cD 165 30 0.1500 0.0727 0.4000 6.6 4kpq-a1-m1-cD_4kpq-a1-m1-cF
12 1zjc-a1-m2-cA 413 29 0.1625 0.0315 0.4483 6.8 1zjc-a1-m1-cA_1zjc-a1-m2-cA
13 1zjc-a1-m1-cA 413 29 0.1625 0.0315 0.4483 6.8 1zjc-a1-m1-cA_1zjc-a1-m2-cA

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600