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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
TAVLKLYVAGNTPNSVRALKTLNNILEKEFKGVYALKVIDVLKNPQLAEEDKILATPTLA
KVLPPPVRRIIGDLSNREKVLAGLDLLA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5jwq-a1-m3-cB 88 88 1.0000 1.0000 1.0000 3.37e-57 5jwq-a1-m3-cB_5jwq-a1-m3-cD
2 5jwq-a1-m3-cD 89 88 1.0000 0.9888 1.0000 3.71e-57 5jwq-a1-m3-cB_5jwq-a1-m3-cD
3 1vgl-a1-m1-cA 96 87 0.9545 0.8750 0.9655 5.78e-54 1vgl-a1-m1-cA_1vgl-a1-m2-cB
4 1vgl-a1-m2-cB 105 87 0.9545 0.8000 0.9655 8.52e-54 1vgl-a1-m1-cA_1vgl-a1-m2-cB
5 1wwj-a1-m1-cA 99 87 0.8864 0.7879 0.8966 6.38e-51 1wwj-a1-m1-cC_1wwj-a1-m1-cA, 1wwj-a1-m1-cD_1wwj-a1-m1-cA
6 1wwj-a1-m1-cD 98 87 0.8864 0.7959 0.8966 8.06e-51 1wwj-a1-m1-cC_1wwj-a1-m1-cD, 1wwj-a1-m1-cD_1wwj-a1-m1-cA
7 1wwj-a1-m1-cC 98 87 0.8864 0.7959 0.8966 8.06e-51 1wwj-a1-m1-cC_1wwj-a1-m1-cA, 1wwj-a1-m1-cC_1wwj-a1-m1-cD
8 1r5p-a2-m2-cB 93 87 0.8636 0.8172 0.8736 9.30e-51 1r5p-a2-m2-cA_1r5p-a2-m2-cB
9 1r5p-a2-m2-cA 90 87 0.8636 0.8444 0.8736 9.38e-51 1r5p-a2-m1-cA_1r5p-a2-m2-cA, 1r5p-a2-m2-cA_1r5p-a2-m2-cB
10 1r5p-a2-m1-cA 90 87 0.8636 0.8444 0.8736 9.38e-51 1r5p-a2-m1-cA_1r5p-a2-m2-cA
11 4kso-a1-m1-cD 102 87 0.8977 0.7745 0.9080 5.63e-50 4kso-a1-m1-cA_4kso-a1-m1-cD, 4kso-a1-m1-cC_4kso-a1-m1-cD
12 4kso-a1-m1-cC 102 87 0.8977 0.7745 0.9080 5.63e-50 4kso-a1-m1-cA_4kso-a1-m1-cC, 4kso-a1-m1-cC_4kso-a1-m1-cD
13 4kso-a1-m1-cA 95 85 0.8864 0.8211 0.9176 1.83e-49 4kso-a1-m1-cA_4kso-a1-m1-cC, 4kso-a1-m1-cA_4kso-a1-m1-cD
14 4kun-a1-m1-cA 89 83 0.4318 0.4270 0.4578 2.19e-17 4kun-a1-m1-cB_4kun-a1-m1-cA
15 4kun-a1-m1-cB 88 83 0.4318 0.4318 0.4578 2.23e-17 4kun-a1-m1-cB_4kun-a1-m1-cA
16 5wrw-a3-m1-cF 130 51 0.2045 0.1385 0.3529 2.9 5wrw-a3-m1-cE_5wrw-a3-m1-cF
17 5wrw-a3-m1-cE 130 51 0.2045 0.1385 0.3529 2.9 5wrw-a3-m1-cE_5wrw-a3-m1-cF

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Reference:
Jacob Schwartz et al.

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