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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
TEKLNEIVVRKTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGV
QLVNVQTGSEVRDRRRISYILLRLKRVY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1udv-a1-m1-cA 88 88 1.0000 1.0000 1.0000 1.27e-56 1udv-a1-m1-cB_1udv-a1-m1-cA
2 2bky-a1-m1-cY 86 86 0.9773 1.0000 1.0000 4.21e-55 2bky-a1-m1-cX_2bky-a1-m1-cY
3 2bky-a1-m1-cX 86 86 0.9773 1.0000 1.0000 4.21e-55 2bky-a1-m1-cX_2bky-a1-m1-cY
4 1udv-a1-m1-cB 86 86 0.9773 1.0000 1.0000 4.21e-55 1udv-a1-m1-cB_1udv-a1-m1-cA
5 3wbm-a1-m1-cC 86 86 0.3409 0.3488 0.3488 2.86e-10 3wbm-a1-m1-cA_3wbm-a1-m1-cC
6 3wbm-a1-m1-cA 86 86 0.3409 0.3488 0.3488 2.86e-10 3wbm-a1-m1-cA_3wbm-a1-m1-cC
7 2bky-a1-m1-cB 89 60 0.2727 0.2697 0.4000 2.79e-09 2bky-a1-m1-cA_2bky-a1-m1-cB
8 2bky-a1-m1-cA 89 60 0.2727 0.2697 0.4000 2.79e-09 2bky-a1-m1-cA_2bky-a1-m1-cB
9 1h0x-a1-m1-cB 89 60 0.2727 0.2697 0.4000 2.79e-09 1h0x-a1-m1-cA_1h0x-a1-m1-cB
10 1h0x-a1-m1-cA 89 60 0.2727 0.2697 0.4000 2.79e-09 1h0x-a1-m1-cA_1h0x-a1-m1-cB
11 1nfh-a1-m2-cB 86 58 0.2500 0.2558 0.3793 9.98e-08 1nfh-a1-m1-cA_1nfh-a1-m2-cB
12 1nfh-a1-m1-cA 86 58 0.2500 0.2558 0.3793 9.98e-08 1nfh-a1-m1-cA_1nfh-a1-m2-cB
13 1nfj-a1-m4-cA 87 58 0.2500 0.2529 0.3793 1.04e-07 1nfj-a1-m1-cA_1nfj-a1-m4-cA
14 1nfj-a1-m3-cA 87 58 0.2500 0.2529 0.3793 1.04e-07 1nfj-a1-m1-cA_1nfj-a1-m3-cA
15 1nfj-a1-m1-cA 87 58 0.2500 0.2529 0.3793 1.04e-07 1nfj-a1-m1-cA_1nfj-a1-m3-cA, 1nfj-a1-m1-cA_1nfj-a1-m4-cA
16 3toe-a1-m1-cB 86 58 0.2614 0.2674 0.3966 5.09e-06 3toe-a1-m1-cA_3toe-a1-m1-cB
17 3toe-a1-m1-cA 86 58 0.2614 0.2674 0.3966 5.09e-06 3toe-a1-m1-cA_3toe-a1-m1-cB
18 3u6y-a1-m1-cC 99 85 0.2727 0.2424 0.2824 3.62e-04 3u6y-a1-m1-cA_3u6y-a1-m1-cC
19 3u6y-a1-m1-cA 99 85 0.2727 0.2424 0.2824 3.62e-04 3u6y-a1-m1-cA_3u6y-a1-m1-cC
20 4z9e-a2-m1-cD 85 36 0.1818 0.1882 0.4444 0.001 4z9e-a2-m1-cC_4z9e-a2-m1-cD
21 4z9e-a2-m1-cC 85 36 0.1818 0.1882 0.4444 0.001 4z9e-a2-m1-cC_4z9e-a2-m1-cD
22 4wk5-a1-m2-cA 256 50 0.1932 0.0664 0.3400 0.048 4wk5-a1-m1-cA_4wk5-a1-m2-cA
23 4wk5-a1-m1-cA 256 50 0.1932 0.0664 0.3400 0.048 4wk5-a1-m1-cA_4wk5-a1-m2-cA
24 4em6-a2-m1-cC 544 32 0.1705 0.0276 0.4688 1.00 4em6-a2-m1-cC_4em6-a2-m1-cA
25 4em6-a2-m1-cA 546 32 0.1705 0.0275 0.4688 1.00 4em6-a2-m1-cC_4em6-a2-m1-cA
26 8haw-a1-m1-cB 478 57 0.2159 0.0397 0.3333 1.1 8haw-a1-m1-cA_8haw-a1-m1-cB
27 8haw-a1-m1-cA 478 57 0.2159 0.0397 0.3333 1.1 8haw-a1-m1-cA_8haw-a1-m1-cB
28 8hav-a1-m1-cB 399 57 0.2045 0.0451 0.3158 8.4 8hav-a1-m1-cA_8hav-a1-m1-cB
29 8hav-a1-m1-cA 399 57 0.2045 0.0451 0.3158 8.4 8hav-a1-m1-cA_8hav-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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