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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=72)
TFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESR
TNSDIVEALNKK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5f28-a3-m2-cD 72 72 1.0000 1.0000 1.0000 4.57e-49 5f28-a3-m2-cC_5f28-a3-m2-cD
2 5f28-a3-m2-cC 72 72 1.0000 1.0000 1.0000 4.57e-49 5f28-a3-m2-cC_5f28-a3-m2-cD
3 7nb0-a2-m1-cB 57 55 0.4167 0.5263 0.5455 1.24e-14 7nb0-a2-m1-cD_7nb0-a2-m1-cB
4 7nb0-a2-m1-cD 55 51 0.4028 0.5273 0.5686 4.51e-14 7nb0-a2-m1-cD_7nb0-a2-m1-cB
5 1mnm-a1-m1-cA 85 54 0.2500 0.2118 0.3333 8.92e-08 1mnm-a1-m1-cB_1mnm-a1-m1-cA
6 1mnm-a1-m1-cB 81 54 0.2500 0.2222 0.3333 9.43e-08 1mnm-a1-m1-cB_1mnm-a1-m1-cA
7 1hbx-a1-m1-cA 87 47 0.2500 0.2069 0.3830 1.07e-07 1hbx-a1-m1-cB_1hbx-a1-m1-cA
8 1hbx-a1-m1-cB 86 47 0.2500 0.2093 0.3830 1.07e-07 1hbx-a1-m1-cB_1hbx-a1-m1-cA
9 3ha4-a3-m1-cG 113 69 0.2500 0.1593 0.2609 8.8 3ha4-a3-m1-cC_3ha4-a3-m1-cG
10 6rlb-a1-m1-cB 889 22 0.1250 0.0101 0.4091 9.1 6rlb-a1-m1-cB_6rlb-a1-m1-cA
11 3ha4-a3-m1-cC 113 69 0.2500 0.1593 0.2609 9.7 3ha4-a3-m1-cC_3ha4-a3-m1-cG

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Reference:
Jacob Schwartz et al.

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