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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
TKAVTFYEDINYGGASVSLQPGNYTLSQLNTAKIPNDWMSSLKVPSGWTVDVYENDNFTG
TKWTYTSDTPWVGNDANDKMSSVKIYST

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3so1-a2-m1-cG 88 88 1.0000 1.0000 1.0000 4.96e-60 3so1-a2-m1-cB_3so1-a2-m1-cG
2 3so1-a2-m1-cB 87 87 0.9886 1.0000 1.0000 1.94e-59 3so1-a2-m1-cB_3so1-a2-m1-cG
3 3hzb-a4-m1-cH 87 85 0.3523 0.3563 0.3647 2.42e-15 3hzb-a4-m1-cG_3hzb-a4-m1-cH
4 3hzb-a4-m1-cG 87 85 0.3523 0.3563 0.3647 2.42e-15 3hzb-a4-m1-cG_3hzb-a4-m1-cH
5 6fd8-a1-m2-cB 174 90 0.2955 0.1494 0.2889 0.084 6fd8-a1-m1-cA_6fd8-a1-m2-cB
6 6fd8-a1-m2-cB 174 69 0.2386 0.1207 0.3043 0.089 6fd8-a1-m1-cA_6fd8-a1-m2-cB
7 6fd8-a1-m1-cA 174 90 0.2955 0.1494 0.2889 0.084 6fd8-a1-m1-cA_6fd8-a1-m2-cB
8 6fd8-a1-m1-cA 174 69 0.2386 0.1207 0.3043 0.089 6fd8-a1-m1-cA_6fd8-a1-m2-cB
9 1ytq-a3-m4-cA 181 87 0.3182 0.1547 0.3218 0.32 1ytq-a3-m1-cA_1ytq-a3-m4-cA, 1ytq-a3-m2-cA_1ytq-a3-m4-cA, 1ytq-a3-m3-cA_1ytq-a3-m4-cA
10 1ytq-a3-m3-cA 181 87 0.3182 0.1547 0.3218 0.32 1ytq-a3-m3-cA_1ytq-a3-m4-cA
11 1ytq-a3-m2-cA 181 87 0.3182 0.1547 0.3218 0.32 1ytq-a3-m2-cA_1ytq-a3-m4-cA
12 1ytq-a3-m1-cA 181 87 0.3182 0.1547 0.3218 0.32 1ytq-a3-m1-cA_1ytq-a3-m4-cA
13 3lwk-a1-m2-cA 182 40 0.1250 0.0604 0.2750 1.7 3lwk-a1-m1-cA_3lwk-a1-m2-cA
14 3lwk-a1-m1-cA 182 40 0.1250 0.0604 0.2750 1.7 3lwk-a1-m1-cA_3lwk-a1-m2-cA
15 5cx8-a1-m1-cB 466 53 0.2273 0.0429 0.3774 2.2 5cx8-a1-m1-cA_5cx8-a1-m1-cB
16 5cx8-a1-m1-cA 466 53 0.2273 0.0429 0.3774 2.2 5cx8-a1-m1-cA_5cx8-a1-m1-cB
17 5nmw-a2-m3-cC 405 38 0.1477 0.0321 0.3421 3.3 5nmw-a2-m1-cD_5nmw-a2-m3-cC
18 5nmw-a2-m1-cD 405 38 0.1477 0.0321 0.3421 3.3 5nmw-a2-m1-cD_5nmw-a2-m3-cC
19 6wlb-a1-m1-cC 720 24 0.0909 0.0111 0.3333 3.9 6wlb-a1-m1-cB_6wlb-a1-m1-cC
20 6wlb-a1-m1-cB 720 24 0.0909 0.0111 0.3333 3.9 6wlb-a1-m1-cB_6wlb-a1-m1-cC
21 3qk3-a1-m1-cC 176 40 0.1136 0.0568 0.2500 4.0 3qk3-a1-m1-cB_3qk3-a1-m1-cC
22 3qk3-a1-m1-cB 176 40 0.1136 0.0568 0.2500 4.0 3qk3-a1-m1-cB_3qk3-a1-m1-cC
23 1bd7-a1-m1-cB 171 40 0.1591 0.0819 0.3500 4.3 1bd7-a1-m1-cB_1bd7-a1-m1-cA
24 1bd7-a1-m1-cA 176 40 0.1591 0.0795 0.3500 4.3 1bd7-a1-m1-cB_1bd7-a1-m1-cA
25 5x62-a1-m1-cA 376 41 0.1591 0.0372 0.3415 7.5 5x62-a1-m1-cA_5x62-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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