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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
TKGWSEVLKGSECKPRPIVVPVSETHPELTSQRFNPPCVTLMRCGGCCNDESLECVPTEE
VNVTMELLGASGSGSNGMQRLSFVEHKKCDCRPR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3v6b-a1-m2-cA 94 94 1.0000 1.0000 1.0000 1.81e-65 3v6b-a1-m1-cA_3v6b-a1-m2-cA
2 3v6b-a1-m1-cA 94 94 1.0000 1.0000 1.0000 1.81e-65 3v6b-a1-m1-cA_3v6b-a1-m2-cA
3 1fzv-a1-m1-cB 100 90 0.3936 0.3700 0.4111 4.90e-20 1fzv-a1-m1-cA_1fzv-a1-m1-cB
4 1fzv-a1-m1-cA 100 90 0.3936 0.3700 0.4111 4.90e-20 1fzv-a1-m1-cA_1fzv-a1-m1-cB
5 1wq8-a2-m8-cA 99 95 0.3723 0.3535 0.3684 7.97e-20 1wq8-a2-m3-cA_1wq8-a2-m8-cA, 1wq8-a2-m5-cA_1wq8-a2-m8-cA
6 1wq8-a2-m5-cA 99 95 0.3723 0.3535 0.3684 7.97e-20 1wq8-a2-m5-cA_1wq8-a2-m8-cA
7 1wq8-a2-m3-cA 99 95 0.3723 0.3535 0.3684 7.97e-20 1wq8-a2-m3-cA_1wq8-a2-m8-cA
8 2c7w-a1-m1-cB 95 91 0.3830 0.3789 0.3956 2.96e-19 2c7w-a1-m1-cA_2c7w-a1-m1-cB
9 2c7w-a1-m1-cA 95 91 0.3830 0.3789 0.3956 2.96e-19 2c7w-a1-m1-cA_2c7w-a1-m1-cB
10 1wq9-a1-m1-cB 95 93 0.3298 0.3263 0.3333 4.78e-18 1wq9-a1-m1-cB_1wq9-a1-m1-cA
11 1wq9-a1-m1-cA 96 93 0.3298 0.3229 0.3333 5.07e-18 1wq9-a1-m1-cB_1wq9-a1-m1-cA
12 2x1w-a1-m1-cB 98 88 0.3085 0.2959 0.3295 7.02e-13 2x1w-a1-m1-cA_2x1w-a1-m1-cB
13 2x1w-a1-m1-cA 98 85 0.3085 0.2959 0.3412 8.44e-13 2x1w-a1-m1-cA_2x1w-a1-m1-cB
14 2xv7-a1-m2-cA 104 94 0.3298 0.2981 0.3298 6.95e-11 2xv7-a1-m1-cA_2xv7-a1-m2-cA
15 2xv7-a1-m1-cA 104 94 0.3298 0.2981 0.3298 6.95e-11 2xv7-a1-m1-cA_2xv7-a1-m2-cA
16 3mjg-a2-m1-cB 101 51 0.2234 0.2079 0.4118 2.45e-06 3mjg-a2-m1-cA_3mjg-a2-m1-cB
17 3mjg-a2-m1-cA 97 51 0.2234 0.2165 0.4118 2.67e-06 3mjg-a2-m1-cA_3mjg-a2-m1-cB
18 3mjk-a3-m1-cY 129 48 0.2021 0.1473 0.3958 3.62e-05 3mjk-a3-m1-cX_3mjk-a3-m1-cY
19 3mjk-a3-m1-cX 121 48 0.2021 0.1570 0.3958 4.54e-05 3mjk-a3-m1-cX_3mjk-a3-m1-cY
20 1pdg-a2-m2-cC 86 24 0.1383 0.1512 0.5417 2.81e-04 1pdg-a2-m1-cC_1pdg-a2-m2-cC
21 1pdg-a2-m1-cC 86 24 0.1383 0.1512 0.5417 2.81e-04 1pdg-a2-m1-cC_1pdg-a2-m2-cC
22 5e38-a1-m1-cB 175 63 0.2128 0.1143 0.3175 0.22 5e38-a1-m1-cB_5e38-a1-m1-cC, 5e38-a1-m1-cB_5e38-a1-m1-cD
23 5e38-a1-m1-cA 209 58 0.1915 0.0861 0.3103 1.8 5e38-a1-m1-cA_5e38-a1-m1-cD, 5e38-a1-m1-cC_5e38-a1-m1-cA
24 5e38-a1-m1-cD 213 58 0.1915 0.0845 0.3103 1.9 5e38-a1-m1-cA_5e38-a1-m1-cD, 5e38-a1-m1-cB_5e38-a1-m1-cD
25 5e38-a1-m1-cC 205 57 0.1915 0.0878 0.3158 2.1 5e38-a1-m1-cB_5e38-a1-m1-cC, 5e38-a1-m1-cC_5e38-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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