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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
TKKERIAIQRSAEEALGKLKAIRQLCGAESSDQEVEIWTNRIKELEDWLWGESPIA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2nr5-a3-m5-cG 56 56 1.0000 1.0000 1.0000 2.42e-34 2nr5-a3-m5-cB_2nr5-a3-m5-cG
2 2nr5-a1-m1-cG 56 56 1.0000 1.0000 1.0000 2.42e-34 2nr5-a1-m1-cA_2nr5-a1-m1-cG
3 2nr5-a1-m1-cA 56 56 0.9821 0.9821 0.9821 1.14e-33 2nr5-a1-m1-cA_2nr5-a1-m1-cG
4 2nr5-a3-m5-cC 60 60 1.0000 0.9333 0.9333 3.51e-32 2nr5-a3-m5-cB_2nr5-a3-m5-cC
5 2nr5-a3-m5-cB 54 56 0.9643 1.0000 0.9643 5.09e-31 2nr5-a3-m5-cB_2nr5-a3-m5-cC, 2nr5-a3-m5-cB_2nr5-a3-m5-cG
6 1tll-a1-m1-cB 616 37 0.1786 0.0162 0.2703 0.42 1tll-a1-m1-cB_1tll-a1-m1-cA
7 1tll-a1-m1-cA 630 37 0.1786 0.0159 0.2703 0.45 1tll-a1-m1-cB_1tll-a1-m1-cA
8 4wwu-a2-m1-cH 363 37 0.1964 0.0303 0.2973 3.6 4wwu-a2-m1-cE_4wwu-a2-m1-cH
9 4wwu-a2-m1-cE 349 37 0.1964 0.0315 0.2973 4.2 4wwu-a2-m1-cE_4wwu-a2-m1-cH
10 3ia7-a1-m1-cA 394 15 0.1786 0.0254 0.6667 5.0 3ia7-a1-m1-cB_3ia7-a1-m1-cA
11 3ia7-a1-m1-cB 382 15 0.1786 0.0262 0.6667 5.0 3ia7-a1-m1-cB_3ia7-a1-m1-cA
12 1tqj-a1-m1-cF 217 24 0.1607 0.0415 0.3750 6.1 1tqj-a1-m1-cA_1tqj-a1-m1-cF
13 1tqj-a1-m1-cA 217 24 0.1607 0.0415 0.3750 6.1 1tqj-a1-m1-cA_1tqj-a1-m1-cC, 1tqj-a1-m1-cA_1tqj-a1-m1-cF
14 1tqj-a1-m1-cC 218 24 0.1607 0.0413 0.3750 6.6 1tqj-a1-m1-cA_1tqj-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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