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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
TKLALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALKFGPSTFGVFDAFADEAG
RQAHLNGQIAAALANAATLLSSPPNIEKVELLAAKLPAG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2pd1-a5-m3-cD 99 99 1.0000 1.0000 1.0000 1.52e-64 2pd1-a5-m3-cB_2pd1-a5-m3-cD, 2pd1-a5-m3-cD_2pd1-a5-m1-cA
2 2pd1-a3-m2-cC 99 99 1.0000 1.0000 1.0000 1.52e-64 2pd1-a3-m1-cC_2pd1-a3-m2-cC
3 2pd1-a3-m1-cC 99 99 1.0000 1.0000 1.0000 1.52e-64 2pd1-a3-m1-cC_2pd1-a3-m2-cC
4 2pd1-a5-m1-cA 101 99 1.0000 0.9802 1.0000 1.64e-64 2pd1-a5-m3-cD_2pd1-a5-m1-cA
5 2pd1-a3-m2-cA 101 99 1.0000 0.9802 1.0000 1.64e-64 2pd1-a3-m1-cA_2pd1-a3-m2-cA
6 2pd1-a3-m1-cA 101 99 1.0000 0.9802 1.0000 1.64e-64 2pd1-a3-m1-cA_2pd1-a3-m2-cA
7 2pd1-a5-m3-cB 98 98 0.9899 1.0000 1.0000 1.15e-63 2pd1-a5-m3-cB_2pd1-a5-m3-cD
8 4aoe-a1-m9-cE 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m1-cA_4aoe-a1-m9-cE, 4aoe-a1-m5-cA_4aoe-a1-m9-cE, 4aoe-a1-m5-cB_4aoe-a1-m9-cE, 4aoe-a1-m5-cE_4aoe-a1-m9-cE, 4aoe-a1-m9-cD_4aoe-a1-m9-cE
9 4aoe-a1-m9-cD 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m11-cC_4aoe-a1-m9-cD, 4aoe-a1-m11-cD_4aoe-a1-m9-cD, 4aoe-a1-m5-cB_4aoe-a1-m9-cD, 4aoe-a1-m9-cD_4aoe-a1-m9-cE
10 4aoe-a1-m9-cC 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m11-cC_4aoe-a1-m9-cC
11 4aoe-a1-m9-cA 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m5-cA_4aoe-a1-m9-cA
12 4aoe-a1-m5-cE 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m5-cE_4aoe-a1-m9-cE
13 4aoe-a1-m5-cB 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m5-cB_4aoe-a1-m9-cD, 4aoe-a1-m5-cB_4aoe-a1-m9-cE
14 4aoe-a1-m5-cA 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m5-cA_4aoe-a1-m9-cA, 4aoe-a1-m5-cA_4aoe-a1-m9-cE
15 4aoe-a1-m11-cD 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m11-cD_4aoe-a1-m9-cD
16 4aoe-a1-m11-cC 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m11-cC_4aoe-a1-m9-cC, 4aoe-a1-m11-cC_4aoe-a1-m9-cD
17 4aoe-a1-m1-cA 205 78 0.2424 0.1171 0.3077 1.6 4aoe-a1-m1-cA_4aoe-a1-m9-cE
18 3pgb-a1-m2-cA 739 38 0.1414 0.0189 0.3684 5.8 3pgb-a1-m1-cA_3pgb-a1-m2-cA
19 3pgb-a1-m1-cA 739 38 0.1414 0.0189 0.3684 5.8 3pgb-a1-m1-cA_3pgb-a1-m2-cA
20 6o3p-a1-m1-cB 320 45 0.1616 0.0500 0.3556 7.5 6o3p-a1-m1-cA_6o3p-a1-m1-cB
21 8huy-a1-m1-cA 730 14 0.1010 0.0137 0.7143 8.3 8huy-a1-m1-cB_8huy-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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