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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=63)
TKLLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVLESEARTLTTEERLDKLE
HHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2pk7-a1-m1-cA 63 63 1.0000 1.0000 1.0000 2.89e-40 2pk7-a1-m1-cB_2pk7-a1-m1-cA
2 2pk7-a1-m1-cB 59 59 0.9365 1.0000 1.0000 2.10e-36 2pk7-a1-m1-cB_2pk7-a1-m1-cA
3 2hf1-a3-m1-cA 59 60 0.5873 0.6271 0.6167 7.99e-17 2hf1-a3-m1-cB_2hf1-a3-m1-cA
4 2hf1-a3-m1-cB 57 59 0.5873 0.6491 0.6271 9.49e-17 2hf1-a3-m1-cB_2hf1-a3-m1-cA
5 1xpi-a3-m2-cB 229 33 0.1905 0.0524 0.3636 0.75 1xpi-a3-m1-cA_1xpi-a3-m2-cB, 1xpi-a3-m1-cB_1xpi-a3-m2-cB, 1xpi-a3-m2-cA_1xpi-a3-m2-cB
6 1xpi-a3-m1-cB 229 33 0.1905 0.0524 0.3636 0.75 1xpi-a3-m1-cB_1xpi-a3-m2-cB
7 6ude-a1-m1-cD 492 27 0.1587 0.0203 0.3704 1.2 6ude-a1-m1-cD_6ude-a1-m1-cB, 6ude-a1-m1-cD_6ude-a1-m1-cC
8 6ude-a1-m1-cC 494 27 0.1587 0.0202 0.3704 1.2 6ude-a1-m1-cD_6ude-a1-m1-cC
9 6ude-a1-m1-cB 495 27 0.1587 0.0202 0.3704 1.2 6ude-a1-m1-cD_6ude-a1-m1-cB
10 1jil-a1-m2-cA 323 34 0.2381 0.0464 0.4412 1.8 1jil-a1-m1-cA_1jil-a1-m2-cA
11 1jil-a1-m1-cA 323 34 0.2381 0.0464 0.4412 1.8 1jil-a1-m1-cA_1jil-a1-m2-cA
12 1jij-a2-m3-cA 319 34 0.2381 0.0470 0.4412 1.9 1jij-a2-m1-cA_1jij-a2-m3-cA
13 1jij-a2-m1-cA 319 34 0.2381 0.0470 0.4412 1.9 1jij-a2-m1-cA_1jij-a2-m3-cA
14 1jij-a1-m2-cA 319 34 0.2381 0.0470 0.4412 1.9 1jij-a1-m1-cA_1jij-a1-m2-cA
15 1jij-a1-m1-cA 319 34 0.2381 0.0470 0.4412 1.9 1jij-a1-m1-cA_1jij-a1-m2-cA
16 3bnu-a1-m1-cA 497 38 0.2698 0.0342 0.4474 3.7 3bnu-a1-m1-cA_3bnu-a1-m1-cB
17 3r90-a1-m1-cA 185 22 0.1429 0.0486 0.4091 4.4 3r90-a1-m1-cF_3r90-a1-m1-cA
18 3r90-a1-m1-cH 180 22 0.1429 0.0500 0.4091 4.7 3r90-a1-m1-cH_3r90-a1-m1-cF
19 3r90-a1-m1-cF 181 22 0.1429 0.0497 0.4091 5.0 3r90-a1-m1-cF_3r90-a1-m1-cA, 3r90-a1-m1-cH_3r90-a1-m1-cF
20 7som-a1-m1-cH 982 56 0.2698 0.0173 0.3036 8.0 7som-a1-m1-cH_7som-a1-m1-cI
21 7som-a1-m1-cI 993 56 0.2698 0.0171 0.3036 8.0 7som-a1-m1-cH_7som-a1-m1-cI

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Reference:
Jacob Schwartz et al.

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