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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=61)
TMCYSHTTTSRAILTNCGENSCYRKSRRHPPKMVLGRGCGCPPGDDNLEVKCCTSPDKCN
Y

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4bdt-a2-m6-cB 61 61 1.0000 1.0000 1.0000 1.29e-40 4bdt-a2-m4-cB_4bdt-a2-m6-cB
2 4bdt-a2-m4-cB 61 61 1.0000 1.0000 1.0000 1.29e-40 4bdt-a2-m4-cB_4bdt-a2-m6-cB
3 1fsc-a1-m2-cA 61 61 1.0000 1.0000 1.0000 1.29e-40 1fsc-a1-m1-cA_1fsc-a1-m2-cA
4 1fsc-a1-m1-cA 61 61 1.0000 1.0000 1.0000 1.29e-40 1fsc-a1-m1-cA_1fsc-a1-m2-cA
5 1v6p-a1-m1-cB 62 60 0.3607 0.3548 0.3667 5.46e-06 1v6p-a1-m1-cA_1v6p-a1-m1-cB
6 1v6p-a1-m1-cA 62 60 0.3607 0.3548 0.3667 5.46e-06 1v6p-a1-m1-cA_1v6p-a1-m1-cB
7 1qkd-a1-m1-cB 62 56 0.2951 0.2903 0.3214 5.63e-05 1qkd-a1-m1-cA_1qkd-a1-m1-cB
8 1qkd-a1-m1-cA 62 56 0.2951 0.2903 0.3214 5.63e-05 1qkd-a1-m1-cA_1qkd-a1-m1-cB
9 7c28-a1-m1-cB 59 46 0.3279 0.3390 0.4348 0.001 7c28-a1-m1-cB_7c28-a1-m1-cA
10 7c28-a1-m1-cA 65 63 0.3770 0.3538 0.3651 0.001 7c28-a1-m1-cB_7c28-a1-m1-cA
11 3vts-a1-m1-cB 61 45 0.2951 0.2951 0.4000 0.006 3vts-a1-m1-cA_3vts-a1-m1-cB
12 3vts-a1-m1-cA 61 45 0.2951 0.2951 0.4000 0.006 3vts-a1-m1-cA_3vts-a1-m1-cB
13 1tgx-a4-m15-cC 60 45 0.2787 0.2833 0.3778 0.033 1tgx-a4-m14-cB_1tgx-a4-m15-cC
14 1tgx-a4-m14-cB 60 45 0.2787 0.2833 0.3778 0.033 1tgx-a4-m14-cB_1tgx-a4-m15-cC
15 1tgx-a3-m9-cA 60 45 0.2787 0.2833 0.3778 0.033 1tgx-a3-m10-cB_1tgx-a3-m9-cA
16 1tgx-a3-m10-cB 60 45 0.2787 0.2833 0.3778 0.033 1tgx-a3-m10-cB_1tgx-a3-m9-cA
17 1tgx-a1-m4-cC 60 45 0.2787 0.2833 0.3778 0.033 1tgx-a1-m4-cA_1tgx-a1-m4-cC
18 1tgx-a1-m4-cA 60 45 0.2787 0.2833 0.3778 0.033 1tgx-a1-m4-cA_1tgx-a1-m4-cC
19 1ff4-a2-m3-cA 65 46 0.2623 0.2462 0.3478 0.097 1ff4-a2-m1-cA_1ff4-a2-m3-cA
20 1ff4-a2-m1-cA 65 46 0.2623 0.2462 0.3478 0.097 1ff4-a2-m1-cA_1ff4-a2-m3-cA
21 1ff4-a1-m2-cA 65 46 0.2623 0.2462 0.3478 0.097 1ff4-a1-m1-cA_1ff4-a1-m2-cA
22 1ff4-a1-m1-cA 65 46 0.2623 0.2462 0.3478 0.097 1ff4-a1-m1-cA_1ff4-a1-m2-cA
23 4lft-a1-m1-cA 64 49 0.2951 0.2812 0.3673 0.39 4lft-a1-m1-cA_4lft-a1-m1-cB
24 1xt3-a1-m2-cB 60 45 0.2623 0.2667 0.3556 0.43 1xt3-a1-m1-cA_1xt3-a1-m2-cB
25 1xt3-a1-m1-cA 60 45 0.2623 0.2667 0.3556 0.43 1xt3-a1-m1-cA_1xt3-a1-m2-cB
26 4lft-a1-m1-cB 72 49 0.2951 0.2500 0.3673 0.65 4lft-a1-m1-cA_4lft-a1-m1-cB
27 2abx-a1-m1-cB 74 63 0.4262 0.3514 0.4127 0.69 2abx-a1-m1-cA_2abx-a1-m1-cB
28 2abx-a1-m1-cA 74 63 0.4262 0.3514 0.4127 0.69 2abx-a1-m1-cA_2abx-a1-m1-cB
29 3neq-a3-m2-cA 66 46 0.2623 0.2424 0.3478 1.4 3neq-a3-m1-cB_3neq-a3-m2-cA
30 3neq-a3-m1-cB 66 46 0.2623 0.2424 0.3478 1.4 3neq-a3-m1-cB_3neq-a3-m2-cA

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Reference:
Jacob Schwartz et al.

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