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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
TNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS
EDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3cm2-a5-m1-cG 102 96 1.0000 0.9412 1.0000 8.47e-71 3cm2-a5-m1-cE_3cm2-a5-m1-cG
2 3cm2-a5-m1-cE 102 96 1.0000 0.9412 1.0000 8.47e-71 3cm2-a5-m1-cE_3cm2-a5-m1-cG
3 4ec4-a5-m1-cE 108 96 1.0000 0.8889 1.0000 8.79e-71 4ec4-a5-m1-cL_4ec4-a5-m1-cE
4 4hy0-a3-m1-cE 96 96 1.0000 1.0000 1.0000 9.22e-71 4hy0-a3-m1-cE_4hy0-a3-m1-cD
5 5oqw-a1-m1-cB 107 96 1.0000 0.8972 1.0000 9.40e-71 5oqw-a1-m1-cA_5oqw-a1-m1-cB
6 5oqw-a1-m1-cA 106 96 1.0000 0.9057 1.0000 1.11e-70 5oqw-a1-m1-cA_5oqw-a1-m1-cB
7 2opy-a1-m2-cA 106 96 1.0000 0.9057 1.0000 1.11e-70 2opy-a1-m1-cA_2opy-a1-m2-cA
8 2opy-a1-m1-cA 106 96 1.0000 0.9057 1.0000 1.11e-70 2opy-a1-m1-cA_2opy-a1-m2-cA
9 4ec4-a5-m1-cL 107 96 1.0000 0.8972 1.0000 1.13e-70 4ec4-a5-m1-cL_4ec4-a5-m1-cE
10 4hy0-a3-m1-cD 98 96 1.0000 0.9796 1.0000 1.21e-70 4hy0-a3-m1-cE_4hy0-a3-m1-cD
11 1xb0-a1-m1-cF 103 96 0.8438 0.7864 0.8438 5.93e-61 1xb0-a1-m1-cE_1xb0-a1-m1-cF
12 1xb1-a2-m1-cB 102 95 0.8333 0.7843 0.8421 3.48e-60 1xb1-a2-m2-cF_1xb1-a2-m1-cB
13 1xb0-a1-m1-cE 93 93 0.8125 0.8387 0.8387 1.43e-58 1xb0-a1-m1-cE_1xb0-a1-m1-cF
14 1xb1-a2-m1-cA 90 90 0.7917 0.8444 0.8444 4.63e-57 1xb1-a2-m2-cF_1xb1-a2-m1-cA
15 1xb1-a2-m2-cF 89 89 0.7812 0.8427 0.8427 2.13e-56 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
16 2i3h-a7-m1-cB 95 94 0.5521 0.5579 0.5638 3.08e-33 2i3h-a7-m2-cA_2i3h-a7-m1-cB
17 2i3h-a6-m2-cB 95 94 0.5521 0.5579 0.5638 3.08e-33 2i3h-a6-m2-cA_2i3h-a6-m2-cB
18 2i3h-a7-m2-cA 90 89 0.5000 0.5333 0.5393 1.86e-29 2i3h-a7-m2-cA_2i3h-a7-m1-cB
19 2i3h-a6-m2-cA 90 89 0.5000 0.5333 0.5393 1.86e-29 2i3h-a6-m2-cA_2i3h-a6-m2-cB
20 2uvl-a1-m1-cB 95 87 0.4896 0.4947 0.5402 5.59e-28 2uvl-a1-m1-cA_2uvl-a1-m1-cB
21 2uvl-a1-m1-cA 94 87 0.4896 0.5000 0.5402 6.06e-28 2uvl-a1-m1-cA_2uvl-a1-m1-cB
22 3mup-a1-m1-cC 103 87 0.4583 0.4272 0.5057 1.10e-26 3mup-a1-m1-cD_3mup-a1-m1-cC
23 3mup-a1-m1-cD 102 87 0.4583 0.4314 0.5057 1.28e-26 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
24 3mup-a1-m1-cB 100 87 0.4583 0.4400 0.5057 1.49e-26 3mup-a1-m1-cB_3mup-a1-m1-cD
25 1oxn-a6-m1-cB 101 93 0.4375 0.4158 0.4516 2.34e-26 1oxn-a6-m1-cD_1oxn-a6-m1-cB
26 1oxq-a9-m2-cE 94 93 0.4375 0.4468 0.4516 2.34e-26 1oxq-a9-m2-cE_1oxq-a9-m1-cD
27 1oxq-a9-m1-cD 100 92 0.4271 0.4100 0.4457 9.12e-26 1oxq-a9-m2-cE_1oxq-a9-m1-cD
28 1oxn-a7-m1-cD 100 92 0.4271 0.4100 0.4457 9.12e-26 1oxn-a7-m1-cA_1oxn-a7-m1-cD
29 1oxn-a6-m1-cD 100 92 0.4271 0.4100 0.4457 9.12e-26 1oxn-a6-m1-cD_1oxn-a6-m1-cB
30 1oxn-a7-m1-cA 99 91 0.4167 0.4040 0.4396 9.72e-25 1oxn-a7-m1-cA_1oxn-a7-m1-cD
31 4j3y-a1-m1-cA 83 80 0.3438 0.3976 0.4125 5.11e-18 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 74 0.3021 0.3766 0.3919 3.15e-15 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 1m4m-a3-m3-cA 112 79 0.2917 0.2500 0.3544 7.34e-10 1m4m-a3-m1-cA_1m4m-a3-m3-cA
34 1m4m-a3-m1-cA 112 79 0.2917 0.2500 0.3544 7.34e-10 1m4m-a3-m1-cA_1m4m-a3-m3-cA
35 1m4m-a2-m2-cA 112 79 0.2917 0.2500 0.3544 7.34e-10 1m4m-a2-m1-cA_1m4m-a2-m2-cA
36 1m4m-a2-m1-cA 112 79 0.2917 0.2500 0.3544 7.34e-10 1m4m-a2-m1-cA_1m4m-a2-m2-cA
37 6gjw-a2-m1-cC 78 52 0.2083 0.2564 0.3846 3.67e-09 6gjw-a2-m1-cB_6gjw-a2-m1-cC
38 6gjw-a2-m1-cB 78 52 0.2083 0.2564 0.3846 3.67e-09 6gjw-a2-m1-cB_6gjw-a2-m1-cC
39 2poi-a1-m2-cA 78 52 0.2083 0.2564 0.3846 3.67e-09 2poi-a1-m1-cA_2poi-a1-m2-cA
40 2poi-a1-m1-cA 78 52 0.2083 0.2564 0.3846 3.67e-09 2poi-a1-m1-cA_2poi-a1-m2-cA
41 3uef-a1-m1-cC 137 89 0.3125 0.2190 0.3371 7.82e-09 3uef-a1-m1-cA_3uef-a1-m1-cC
42 3uef-a1-m1-cA 136 89 0.3125 0.2206 0.3371 8.11e-09 3uef-a1-m1-cA_3uef-a1-m1-cC
43 8atu-a1-m1-cB 2837 85 0.2812 0.0095 0.3176 9.33e-09 8atu-a1-m1-cA_8atu-a1-m1-cB
44 8atu-a1-m1-cA 2837 85 0.2812 0.0095 0.3176 9.33e-09 8atu-a1-m1-cA_8atu-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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