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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
TNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS
EDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEEC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4ec4-a5-m1-cE 108 98 1.0000 0.9074 1.0000 1.61e-72 4ec4-a5-m1-cL_4ec4-a5-m1-cE
2 3cm2-a5-m1-cG 102 98 1.0000 0.9608 1.0000 1.67e-72 3cm2-a5-m1-cE_3cm2-a5-m1-cG
3 3cm2-a5-m1-cE 102 98 1.0000 0.9608 1.0000 1.67e-72 3cm2-a5-m1-cE_3cm2-a5-m1-cG
4 5oqw-a1-m1-cB 107 98 1.0000 0.9159 1.0000 1.82e-72 5oqw-a1-m1-cA_5oqw-a1-m1-cB
5 5oqw-a1-m1-cA 106 98 1.0000 0.9245 1.0000 1.96e-72 5oqw-a1-m1-cA_5oqw-a1-m1-cB
6 2opy-a1-m2-cA 106 98 1.0000 0.9245 1.0000 1.96e-72 2opy-a1-m1-cA_2opy-a1-m2-cA
7 2opy-a1-m1-cA 106 98 1.0000 0.9245 1.0000 1.96e-72 2opy-a1-m1-cA_2opy-a1-m2-cA
8 4ec4-a5-m1-cL 107 98 1.0000 0.9159 1.0000 1.98e-72 4ec4-a5-m1-cL_4ec4-a5-m1-cE
9 4hy0-a3-m1-cD 98 98 1.0000 1.0000 1.0000 2.52e-72 4hy0-a3-m1-cE_4hy0-a3-m1-cD
10 4hy0-a3-m1-cE 96 96 0.9796 1.0000 1.0000 1.23e-70 4hy0-a3-m1-cE_4hy0-a3-m1-cD
11 1xb0-a1-m1-cF 103 96 0.8265 0.7864 0.8438 9.16e-61 1xb0-a1-m1-cE_1xb0-a1-m1-cF
12 1xb1-a2-m1-cB 102 95 0.8163 0.7843 0.8421 5.25e-60 1xb1-a2-m2-cF_1xb1-a2-m1-cB
13 1xb0-a1-m1-cE 93 93 0.7959 0.8387 0.8387 2.11e-58 1xb0-a1-m1-cE_1xb0-a1-m1-cF
14 1xb1-a2-m1-cA 90 90 0.7755 0.8444 0.8444 6.47e-57 1xb1-a2-m2-cF_1xb1-a2-m1-cA
15 1xb1-a2-m2-cF 89 89 0.7653 0.8427 0.8427 3.29e-56 1xb1-a2-m2-cF_1xb1-a2-m1-cA, 1xb1-a2-m2-cF_1xb1-a2-m1-cB
16 2i3h-a7-m1-cB 95 94 0.5408 0.5579 0.5638 3.48e-33 2i3h-a7-m2-cA_2i3h-a7-m1-cB
17 2i3h-a6-m2-cB 95 94 0.5408 0.5579 0.5638 3.48e-33 2i3h-a6-m2-cA_2i3h-a6-m2-cB
18 2i3h-a7-m2-cA 90 89 0.4898 0.5333 0.5393 2.10e-29 2i3h-a7-m2-cA_2i3h-a7-m1-cB
19 2i3h-a6-m2-cA 90 89 0.4898 0.5333 0.5393 2.10e-29 2i3h-a6-m2-cA_2i3h-a6-m2-cB
20 2uvl-a1-m1-cB 95 87 0.4796 0.4947 0.5402 8.95e-28 2uvl-a1-m1-cA_2uvl-a1-m1-cB
21 2uvl-a1-m1-cA 94 87 0.4796 0.5000 0.5402 8.99e-28 2uvl-a1-m1-cA_2uvl-a1-m1-cB
22 3mup-a1-m1-cC 103 96 0.4796 0.4563 0.4896 1.55e-26 3mup-a1-m1-cD_3mup-a1-m1-cC
23 3mup-a1-m1-cD 102 96 0.4796 0.4608 0.4896 1.61e-26 3mup-a1-m1-cB_3mup-a1-m1-cD, 3mup-a1-m1-cD_3mup-a1-m1-cC
24 3mup-a1-m1-cB 100 96 0.4796 0.4700 0.4896 1.75e-26 3mup-a1-m1-cB_3mup-a1-m1-cD
25 1oxn-a6-m1-cB 101 93 0.4286 0.4158 0.4516 2.67e-26 1oxn-a6-m1-cD_1oxn-a6-m1-cB
26 1oxq-a9-m2-cE 94 93 0.4286 0.4468 0.4516 2.95e-26 1oxq-a9-m2-cE_1oxq-a9-m1-cD
27 1oxq-a9-m1-cD 100 92 0.4184 0.4100 0.4457 1.09e-25 1oxq-a9-m2-cE_1oxq-a9-m1-cD
28 1oxn-a7-m1-cD 100 92 0.4184 0.4100 0.4457 1.09e-25 1oxn-a7-m1-cA_1oxn-a7-m1-cD
29 1oxn-a6-m1-cD 100 92 0.4184 0.4100 0.4457 1.09e-25 1oxn-a6-m1-cD_1oxn-a6-m1-cB
30 1oxn-a7-m1-cA 99 91 0.4082 0.4040 0.4396 1.12e-24 1oxn-a7-m1-cA_1oxn-a7-m1-cD
31 4j3y-a1-m1-cA 83 80 0.3367 0.3976 0.4125 5.93e-18 4j3y-a1-m1-cC_4j3y-a1-m1-cA
32 4j3y-a1-m1-cC 77 74 0.2959 0.3766 0.3919 3.31e-15 4j3y-a1-m1-cC_4j3y-a1-m1-cA
33 1m4m-a3-m3-cA 112 80 0.2857 0.2500 0.3500 9.71e-10 1m4m-a3-m1-cA_1m4m-a3-m3-cA
34 1m4m-a3-m1-cA 112 80 0.2857 0.2500 0.3500 9.71e-10 1m4m-a3-m1-cA_1m4m-a3-m3-cA
35 1m4m-a2-m2-cA 112 80 0.2857 0.2500 0.3500 9.71e-10 1m4m-a2-m1-cA_1m4m-a2-m2-cA
36 1m4m-a2-m1-cA 112 80 0.2857 0.2500 0.3500 9.71e-10 1m4m-a2-m1-cA_1m4m-a2-m2-cA
37 6gjw-a2-m1-cC 78 52 0.2041 0.2564 0.3846 4.70e-09 6gjw-a2-m1-cB_6gjw-a2-m1-cC
38 6gjw-a2-m1-cB 78 52 0.2041 0.2564 0.3846 4.70e-09 6gjw-a2-m1-cB_6gjw-a2-m1-cC
39 2poi-a1-m2-cA 78 52 0.2041 0.2564 0.3846 4.70e-09 2poi-a1-m1-cA_2poi-a1-m2-cA
40 2poi-a1-m1-cA 78 52 0.2041 0.2564 0.3846 4.70e-09 2poi-a1-m1-cA_2poi-a1-m2-cA
41 8atu-a1-m1-cB 2837 85 0.2755 0.0095 0.3176 1.00e-08 8atu-a1-m1-cA_8atu-a1-m1-cB
42 8atu-a1-m1-cA 2837 85 0.2755 0.0095 0.3176 1.00e-08 8atu-a1-m1-cA_8atu-a1-m1-cB
43 3uef-a1-m1-cC 137 89 0.3061 0.2190 0.3371 1.05e-08 3uef-a1-m1-cA_3uef-a1-m1-cC
44 3uef-a1-m1-cA 136 89 0.3061 0.2206 0.3371 1.15e-08 3uef-a1-m1-cA_3uef-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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