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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQPVIVSGHENQAI
THSITVGSRITVQGFISCKVLHAEQIELI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1txy-a1-m1-cA 89 89 1.0000 1.0000 1.0000 3.50e-61 1txy-a1-m1-cB_1txy-a1-m1-cA
2 1woc-a1-m1-cD 97 97 1.0000 0.9175 0.9175 2.03e-58 1woc-a1-m1-cB_1woc-a1-m1-cD
3 1woc-a1-m1-cB 97 97 1.0000 0.9175 0.9175 2.03e-58 1woc-a1-m1-cB_1woc-a1-m1-cD
4 1txy-a1-m1-cB 81 87 0.8989 0.9877 0.9195 7.70e-52 1txy-a1-m1-cB_1txy-a1-m1-cA
5 4apv-a1-m2-cA 97 96 0.8989 0.8247 0.8333 1.85e-51 4apv-a1-m1-cA_4apv-a1-m2-cA
6 4apv-a1-m1-cA 97 96 0.8989 0.8247 0.8333 1.85e-51 4apv-a1-m1-cA_4apv-a1-m2-cA
7 3k8a-a1-m1-cA 100 82 0.3034 0.2700 0.3293 0.004 3k8a-a1-m1-cA_3k8a-a1-m1-cB
8 3k8a-a1-m1-cB 103 82 0.3034 0.2621 0.3293 0.005 3k8a-a1-m1-cA_3k8a-a1-m1-cB
9 7d8j-a1-m2-cB 98 78 0.2135 0.1939 0.2436 0.066 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
10 5xgt-a1-m1-cA 104 73 0.2135 0.1827 0.2603 0.070 5xgt-a1-m1-cA_5xgt-a1-m1-cB
11 5xgt-a1-m1-cB 105 73 0.2135 0.1810 0.2603 0.074 5xgt-a1-m1-cA_5xgt-a1-m1-cB
12 7d8j-a1-m2-cA 112 78 0.2135 0.1696 0.2436 0.093 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
13 7d8j-a1-m1-cA 112 78 0.2135 0.1696 0.2436 0.093 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
14 6bhw-a2-m1-cE 99 41 0.1573 0.1414 0.3415 0.19 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
15 3lgj-a1-m1-cA 95 87 0.2022 0.1895 0.2069 0.99 3lgj-a1-m1-cA_3lgj-a1-m1-cB
16 4aib-a2-m1-cD 325 41 0.1124 0.0308 0.2439 1.7 4aib-a2-m1-cC_4aib-a2-m1-cD
17 6bhx-a1-m1-cC 102 40 0.1461 0.1275 0.3250 1.7 6bhx-a1-m1-cA_6bhx-a1-m1-cC
18 6bhx-a1-m1-cA 98 40 0.1461 0.1327 0.3250 1.9 6bhx-a1-m1-cA_6bhx-a1-m1-cC
19 4wbd-a1-m2-cA 540 24 0.1236 0.0204 0.4583 2.0 4wbd-a1-m1-cA_4wbd-a1-m2-cA
20 4wbd-a1-m1-cA 540 24 0.1236 0.0204 0.4583 2.0 4wbd-a1-m1-cA_4wbd-a1-m2-cA
21 3tty-a3-m1-cF 675 46 0.1461 0.0193 0.2826 3.6 3tty-a3-m1-cB_3tty-a3-m1-cF, 3tty-a3-m1-cE_3tty-a3-m1-cF
22 3tty-a3-m1-cE 675 46 0.1461 0.0193 0.2826 3.6 3tty-a3-m1-cE_3tty-a3-m1-cF
23 3tty-a3-m1-cB 675 46 0.1461 0.0193 0.2826 3.6 3tty-a3-m1-cB_3tty-a3-m1-cF
24 5i32-a1-m4-cA 238 22 0.1236 0.0462 0.5000 5.5 5i32-a1-m2-cA_5i32-a1-m4-cA
25 5i32-a1-m2-cA 238 22 0.1236 0.0462 0.5000 5.5 5i32-a1-m2-cA_5i32-a1-m4-cA
26 2cz2-a1-m2-cA 207 64 0.1910 0.0821 0.2656 5.9 2cz2-a1-m1-cA_2cz2-a1-m2-cA
27 2cz2-a1-m1-cA 207 64 0.1910 0.0821 0.2656 5.9 2cz2-a1-m1-cA_2cz2-a1-m2-cA
28 4lfg-a1-m1-cB 288 43 0.1348 0.0417 0.2791 6.0 4lfg-a1-m1-cB_4lfg-a1-m1-cA
29 4lfg-a1-m1-cA 290 43 0.1348 0.0414 0.2791 6.0 4lfg-a1-m1-cB_4lfg-a1-m1-cA
30 7lm0-a1-m1-cB 446 38 0.1685 0.0336 0.3947 9.4 7lm0-a1-m1-cB_7lm0-a1-m1-cA
31 7lm0-a1-m1-cA 449 38 0.1685 0.0334 0.3947 9.4 7lm0-a1-m1-cB_7lm0-a1-m1-cA
32 5z1z-a1-m1-cB 314 38 0.1236 0.0350 0.2895 9.7 5z1z-a1-m1-cB_5z1z-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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