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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=33)
TQEYLLKEIMKLLKEQIKLLKEQIKMLKELEKQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4uot-a1-m1-cE 33 33 1.0000 1.0000 1.0000 2.88e-13 4uot-a1-m1-cD_4uot-a1-m1-cE
2 4uot-a1-m1-cD 33 33 1.0000 1.0000 1.0000 2.88e-13 4uot-a1-m1-cD_4uot-a1-m1-cE
3 6g6h-a1-m1-cE 33 33 0.9697 0.9697 0.9697 9.24e-13 6g6h-a1-m1-cD_6g6h-a1-m1-cE
4 6g6h-a1-m1-cD 33 33 0.9697 0.9697 0.9697 9.24e-13 6g6h-a1-m1-cC_6g6h-a1-m1-cD, 6g6h-a1-m1-cD_6g6h-a1-m1-cE
5 6g6h-a1-m1-cC 33 33 0.9697 0.9697 0.9697 9.24e-13 6g6h-a1-m1-cC_6g6h-a1-m1-cD
6 5f42-a2-m3-cB 276 28 0.2727 0.0326 0.3214 1.9 5f42-a2-m2-cB_5f42-a2-m3-cB
7 5f42-a2-m2-cB 276 28 0.2727 0.0326 0.3214 1.9 5f42-a2-m2-cB_5f42-a2-m3-cB
8 7qg6-a4-m1-cB 248 34 0.3333 0.0444 0.3235 2.3 7qg6-a4-m1-cD_7qg6-a4-m1-cB
9 7qg6-a4-m1-cF 246 34 0.3333 0.0447 0.3235 2.3 7qg6-a4-m1-cD_7qg6-a4-m1-cF
10 7qg6-a4-m1-cD 245 34 0.3333 0.0449 0.3235 2.4 7qg6-a4-m1-cD_7qg6-a4-m1-cB, 7qg6-a4-m1-cD_7qg6-a4-m1-cF
11 7nwu-a2-m1-cH 250 34 0.3333 0.0440 0.3235 3.6 7nwu-a2-m1-cF_7nwu-a2-m1-cH
12 7nwu-a2-m1-cF 250 34 0.3333 0.0440 0.3235 3.6 7nwu-a2-m1-cF_7nwu-a2-m1-cH
13 3gaa-a1-m2-cD 242 29 0.4242 0.0579 0.4828 3.9 3gaa-a1-m2-cD_3gaa-a1-m1-cA, 3gaa-a1-m2-cD_3gaa-a1-m2-cE
14 3gaa-a1-m1-cD 242 29 0.4242 0.0579 0.4828 3.9 3gaa-a1-m1-cD_3gaa-a1-m2-cE
15 3gaa-a1-m2-cE 243 29 0.4242 0.0576 0.4828 4.1 3gaa-a1-m1-cD_3gaa-a1-m2-cE, 3gaa-a1-m2-cD_3gaa-a1-m2-cE
16 3gaa-a1-m1-cA 243 29 0.4242 0.0576 0.4828 4.1 3gaa-a1-m2-cD_3gaa-a1-m1-cA
17 3fx7-a1-m1-cB 87 24 0.3030 0.1149 0.4167 9.3 3fx7-a1-m1-cA_3fx7-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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