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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=40)
TRKYLNTNVTPHLLAGMRLIAVQQPEDPLRVLGEYLIEQS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6ven-a1-m1-cP 42 40 1.0000 0.9524 1.0000 3.81e-24 6ven-a1-m1-cQ_6ven-a1-m1-cP
2 6bx3-a1-m1-cM 42 40 1.0000 0.9524 1.0000 4.70e-24 6bx3-a1-m1-cN_6bx3-a1-m1-cM
3 6bx3-a1-m1-cN 40 40 1.0000 1.0000 1.0000 4.72e-24 6bx3-a1-m1-cN_6bx3-a1-m1-cM
4 6ven-a1-m1-cQ 29 35 0.7250 1.0000 0.8286 8.33e-13 6ven-a1-m1-cQ_6ven-a1-m1-cP
5 7n6g-a1-m1-c4P 55 39 0.3250 0.2364 0.3333 4.37e-04 7n6g-a1-m1-c4P_7n6g-a1-m1-c4O
6 7n6g-a1-m1-c4N 64 38 0.3250 0.2031 0.3421 6.33e-04 7n6g-a1-m1-c4K_7n6g-a1-m1-c4N
7 7n6g-a1-m1-c4K 64 38 0.3250 0.2031 0.3421 6.33e-04 7n6g-a1-m1-c4K_7n6g-a1-m1-c4N
8 7n6g-a1-m1-c4O 84 39 0.3250 0.1548 0.3333 0.001 7n6g-a1-m1-c4P_7n6g-a1-m1-c4O
9 3e8s-a1-m2-cA 216 25 0.2250 0.0417 0.3600 2.0 3e8s-a1-m1-cA_3e8s-a1-m2-cA
10 3e8s-a1-m1-cA 216 25 0.2250 0.0417 0.3600 2.0 3e8s-a1-m1-cA_3e8s-a1-m2-cA
11 4uqv-a5-m1-cG 429 19 0.2750 0.0256 0.5789 4.0 4uqv-a5-m1-cH_4uqv-a5-m1-cG
12 7v03-a2-m1-cB 241 19 0.2250 0.0373 0.4737 9.2 7v03-a2-m1-cB_7v03-a2-m1-cC
13 7v03-a2-m1-cC 248 19 0.2250 0.0363 0.4737 9.2 7v03-a2-m1-cB_7v03-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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