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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=74)
TTGWKQENGMWYFYNTDGSMATGWVQVNGSWYYLNSNGSMKVNQWFQVGGKWYYVNTSGE
LAVNTSYRVNDNGE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3hia-a1-m1-cC 74 74 1.0000 1.0000 1.0000 3.37e-48 3hia-a1-m1-cA_3hia-a1-m1-cC, 3hia-a1-m1-cC_3hia-a1-m1-cB
2 3hia-a1-m1-cB 83 77 1.0000 0.8916 0.9610 5.14e-46 3hia-a1-m1-cA_3hia-a1-m1-cB, 3hia-a1-m1-cC_3hia-a1-m1-cB
3 3hia-a1-m1-cA 66 65 0.8784 0.9848 1.0000 2.40e-41 3hia-a1-m1-cA_3hia-a1-m1-cB, 3hia-a1-m1-cA_3hia-a1-m1-cC
4 3hia-a1-m1-cA 66 49 0.3243 0.3636 0.4898 6.35e-09 3hia-a1-m1-cA_3hia-a1-m1-cB, 3hia-a1-m1-cA_3hia-a1-m1-cC
5 6jyx-a1-m1-cB 293 77 0.5676 0.1433 0.5455 5.23e-16 6jyx-a1-m1-cA_6jyx-a1-m1-cB
6 6jyx-a1-m1-cB 293 63 0.3919 0.0990 0.4603 3.45e-10 6jyx-a1-m1-cA_6jyx-a1-m1-cB
7 6jyx-a1-m1-cB 293 56 0.3108 0.0785 0.4107 2.49e-06 6jyx-a1-m1-cA_6jyx-a1-m1-cB
8 6jyx-a1-m1-cB 293 71 0.2838 0.0717 0.2958 1.43e-04 6jyx-a1-m1-cA_6jyx-a1-m1-cB
9 6jyx-a1-m1-cB 293 55 0.2162 0.0546 0.2909 0.63 6jyx-a1-m1-cA_6jyx-a1-m1-cB
10 6jyx-a1-m1-cB 293 44 0.2432 0.0614 0.4091 1.9 6jyx-a1-m1-cA_6jyx-a1-m1-cB
11 6jyx-a1-m1-cA 292 77 0.5676 0.1438 0.5455 5.58e-16 6jyx-a1-m1-cA_6jyx-a1-m1-cB
12 6jyx-a1-m1-cA 292 63 0.3919 0.0993 0.4603 3.69e-10 6jyx-a1-m1-cA_6jyx-a1-m1-cB
13 6jyx-a1-m1-cA 292 56 0.3108 0.0788 0.4107 2.54e-06 6jyx-a1-m1-cA_6jyx-a1-m1-cB
14 6jyx-a1-m1-cA 292 71 0.2838 0.0719 0.2958 1.48e-04 6jyx-a1-m1-cA_6jyx-a1-m1-cB
15 6jyx-a1-m1-cA 292 55 0.2162 0.0548 0.2909 0.64 6jyx-a1-m1-cA_6jyx-a1-m1-cB
16 6jyx-a1-m1-cA 292 44 0.2432 0.0616 0.4091 2.0 6jyx-a1-m1-cA_6jyx-a1-m1-cB
17 5xpx-a1-m1-cA 384 37 0.1757 0.0339 0.3514 0.25 5xpx-a1-m1-cE_5xpx-a1-m1-cA
18 4fkb-a1-m1-cB 387 37 0.1757 0.0336 0.3514 0.25 4fkb-a1-m1-cA_4fkb-a1-m1-cB
19 4fkb-a1-m1-cA 387 37 0.1757 0.0336 0.3514 0.25 4fkb-a1-m1-cA_4fkb-a1-m1-cB
20 5xpx-a1-m1-cE 381 37 0.1757 0.0341 0.3514 0.26 5xpx-a1-m1-cE_5xpx-a1-m1-cA
21 6szi-a1-m1-cA 1276 54 0.1757 0.0102 0.2407 0.98 6szi-a1-m1-cB_6szi-a1-m1-cA
22 6eqo-a1-m1-cB 1803 21 0.1216 0.0050 0.4286 7.2 6eqo-a1-m1-cB_6eqo-a1-m1-cA
23 3dec-a1-m2-cA 969 21 0.1486 0.0114 0.5238 9.5 3dec-a1-m1-cA_3dec-a1-m2-cA
24 3dec-a1-m1-cA 969 21 0.1486 0.0114 0.5238 9.5 3dec-a1-m1-cA_3dec-a1-m2-cA
25 6opa-a1-m3-cG 427 39 0.1892 0.0328 0.3590 10.0 6opa-a1-m3-cG_6opa-a1-m2-cG
26 6opa-a1-m2-cG 427 39 0.1892 0.0328 0.3590 10.0 6opa-a1-m3-cG_6opa-a1-m2-cG

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Reference:
Jacob Schwartz et al.

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