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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
TTNYVTTKNGQTIVTQGKPQLDKETGTSYTDQEGNQREINSNDVAQLIKADLEHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2rd1-a5-m2-cB 56 56 1.0000 1.0000 1.0000 6.87e-36 2rd1-a5-m1-cB_2rd1-a5-m2-cB
2 2rd1-a5-m1-cB 56 56 1.0000 1.0000 1.0000 6.87e-36 2rd1-a5-m1-cB_2rd1-a5-m2-cB
3 2ra2-a7-m2-cB 55 52 0.4821 0.4909 0.5192 3.11e-13 2ra2-a7-m2-cF_2ra2-a7-m2-cB
4 2ra2-a7-m2-cF 50 45 0.4286 0.4800 0.5333 3.25e-11 2ra2-a7-m2-cF_2ra2-a7-m2-cB
5 3bdu-a1-m1-cE 51 47 0.4286 0.4706 0.5106 3.80e-10 3bdu-a1-m1-cA_3bdu-a1-m1-cE
6 3bdu-a1-m1-cA 51 47 0.4286 0.4706 0.5106 3.80e-10 3bdu-a1-m1-cA_3bdu-a1-m1-cE
7 2rb6-a3-m1-cA 53 56 0.4464 0.4717 0.4464 9.74e-09 2rb6-a3-m2-cB_2rb6-a3-m1-cA
8 2rb6-a3-m2-cB 52 55 0.4286 0.4615 0.4364 1.10e-07 2rb6-a3-m2-cB_2rb6-a3-m1-cA
9 7zqb-a1-m1-cj 527 36 0.2321 0.0247 0.3611 1.3 7zqb-a1-m1-ci_7zqb-a1-m1-cj
10 7zqb-a1-m1-ci 527 36 0.2321 0.0247 0.3611 1.3 7zqb-a1-m1-ci_7zqb-a1-m1-cj
11 3lag-a1-m1-cA 92 53 0.2857 0.1739 0.3019 2.2 3lag-a1-m1-cA_3lag-a1-m1-cB
12 3lag-a1-m1-cB 93 53 0.2857 0.1720 0.3019 2.6 3lag-a1-m1-cA_3lag-a1-m1-cB
13 1ei6-a2-m1-cB 403 42 0.2679 0.0372 0.3571 6.8 1ei6-a2-m1-cC_1ei6-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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