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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=83)
VAPTTGWKQENGMWYFYNTDGSMATGWVQVNGSWYYLNSNGSMKVNQWFQVGGKWYYVNT
SGELAVNTSIDGYRVNDNGEWVR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3hia-a1-m1-cB 83 83 1.0000 1.0000 1.0000 1.03e-55 3hia-a1-m1-cA_3hia-a1-m1-cB, 3hia-a1-m1-cC_3hia-a1-m1-cB
2 3hia-a1-m1-cC 74 77 0.8916 1.0000 0.9610 5.76e-46 3hia-a1-m1-cA_3hia-a1-m1-cC, 3hia-a1-m1-cC_3hia-a1-m1-cB
3 3hia-a1-m1-cA 66 66 0.7952 1.0000 1.0000 1.70e-42 3hia-a1-m1-cA_3hia-a1-m1-cB, 3hia-a1-m1-cA_3hia-a1-m1-cC
4 6jyx-a1-m1-cB 293 80 0.5663 0.1604 0.5875 1.75e-22 6jyx-a1-m1-cA_6jyx-a1-m1-cB
5 6jyx-a1-m1-cB 293 71 0.2530 0.0717 0.2958 2.45e-04 6jyx-a1-m1-cA_6jyx-a1-m1-cB
6 6jyx-a1-m1-cB 293 40 0.2048 0.0580 0.4250 2.9 6jyx-a1-m1-cA_6jyx-a1-m1-cB
7 6jyx-a1-m1-cA 292 79 0.5542 0.1575 0.5823 1.25e-21 6jyx-a1-m1-cA_6jyx-a1-m1-cB
8 6jyx-a1-m1-cA 292 71 0.2530 0.0719 0.2958 2.50e-04 6jyx-a1-m1-cA_6jyx-a1-m1-cB
9 6jyx-a1-m1-cA 292 40 0.2048 0.0582 0.4250 2.9 6jyx-a1-m1-cA_6jyx-a1-m1-cB
10 6szi-a1-m1-cA 1276 71 0.2289 0.0149 0.2676 0.055 6szi-a1-m1-cB_6szi-a1-m1-cA
11 4fkb-a1-m1-cB 387 46 0.1687 0.0362 0.3043 0.23 4fkb-a1-m1-cA_4fkb-a1-m1-cB
12 4fkb-a1-m1-cA 387 46 0.1687 0.0362 0.3043 0.23 4fkb-a1-m1-cA_4fkb-a1-m1-cB
13 5xpx-a1-m1-cA 384 46 0.1687 0.0365 0.3043 0.24 5xpx-a1-m1-cE_5xpx-a1-m1-cA
14 5xpx-a1-m1-cE 381 46 0.1687 0.0367 0.3043 0.25 5xpx-a1-m1-cE_5xpx-a1-m1-cA
15 6ccb-a2-m5-cG 440 68 0.2048 0.0386 0.2500 0.57 6ccb-a2-m5-cG_6ccb-a2-m3-cG
16 6ccb-a2-m3-cG 440 68 0.2048 0.0386 0.2500 0.57 6ccb-a2-m5-cG_6ccb-a2-m3-cG
17 2ny7-a5-m3-cG 290 83 0.2289 0.0655 0.2289 3.5 2ny7-a5-m1-cG_2ny7-a5-m3-cG
18 2ny7-a5-m1-cG 290 83 0.2289 0.0655 0.2289 3.5 2ny7-a5-m1-cG_2ny7-a5-m3-cG
19 3dec-a1-m2-cA 969 39 0.1807 0.0155 0.3846 8.5 3dec-a1-m1-cA_3dec-a1-m2-cA
20 3dec-a1-m1-cA 969 39 0.1807 0.0155 0.3846 8.5 3dec-a1-m1-cA_3dec-a1-m2-cA
21 3uu2-a1-m1-cC 298 57 0.2048 0.0570 0.2982 8.5 3uu2-a1-m1-cB_3uu2-a1-m1-cC
22 3uu2-a1-m1-cB 298 57 0.2048 0.0570 0.2982 8.5 3uu2-a1-m1-cB_3uu2-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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